JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C1orf105_chr1_172415685_172473829	0/0	t0006	437	1	0	0	0	0	1	copy fasta	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	t0007	437	1	0	0	1	0	0	copy fasta	C1orf105	chr1	172415685	172473829
C1orf109_chr1_37676570_37695529	0/0	t0001	2085	111	28	22	45	4	12	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	t0002	2085	106	0	12	79	1	14	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	t0003	2085	57	17	7	33	0	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	1/0	t0004	2085	57	8	13	20	4	11	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	t0005	2085	54	18	14	9	5	8	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	t0006	2085	9	9	0	0	0	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	t0007	2085	6	6	0	0	0	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	t0008	2085	6	0	0	6	0	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/1	t0009	2086	4	0	1	0	2	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	t0010	2085	3	3	0	0	0	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	t0011	2085	3	3	0	0	0	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	t0012	2085	2	2	0	0	0	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	t0013	2085	1	0	0	0	1	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	t0014	2085	1	0	1	0	0	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	t0015	2085	1	1	0	0	0	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	t0016	2085	1	0	1	0	0	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	t0017	2085	1	0	0	1	0	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	t0018	2085	1	0	0	1	0	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	t0019	2085	1	0	0	0	1	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	t0020	2085	1	0	0	0	0	1	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	t0021	2086	1	0	0	1	0	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	t0022	2086	1	0	1	0	0	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	t0023	2085	1	0	0	1	0	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	t0024	2085	1	1	0	0	0	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	t0025	2085	1	1	0	0	0	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	t0026	2085	1	1	0	0	0	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf115_chr1_220685363_220704153	1/1	t0001	2463	137	29	42	36	9	19	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	t0002	2463	104	15	19	61	5	4	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	t0003	2463	55	12	2	41	0	0	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	t0004	2463	23	0	3	15	1	4	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	t0005	2463	11	0	0	11	0	0	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	t0006	2463	8	8	0	0	0	0	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	t0007	2463	6	0	2	0	0	4	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	t0008	2463	5	4	1	0	0	0	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	t0009	2463	5	5	0	0	0	0	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	t0010	2463	4	4	0	0	0	0	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	t0011	2463	3	0	0	0	1	2	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	t0012	2463	3	0	0	0	0	3	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	t0013	2463	3	0	0	3	0	0	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	t0014	2463	3	1	2	0	0	0	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	t0015	2463	2	2	0	0	0	0	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	t0016	2463	2	2	0	0	0	0	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	t0017	2463	2	0	0	2	0	0	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	t0018	2463	2	2	0	0	0	0	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	t0019	2463	2	2	0	0	0	0	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	t0020	2463	2	2	0	0	0	0	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	t0021	2463	1	0	0	1	0	0	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	t0022	2463	1	0	0	1	0	0	copy fasta	C1orf115	chr1	220685363	220704153