JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZDHHC22_chr14_77126270_77146791	0/0	t0034	2617	3	3	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0035	2641	3	1	1	0	1	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0036	2641	3	1	0	2	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0037	2639	3	1	0	1	0	1	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0038	2639	3	2	0	1	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0039	2643	3	0	0	3	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0040	2639	3	3	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0041	2629	3	0	2	0	0	1	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0042	2619	3	3	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0043	2641	3	0	1	2	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0044	2645	2	0	1	0	1	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0045	2641	2	2	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0046	2639	2	0	0	2	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0047	2643	2	0	0	1	0	1	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0048	2629	2	1	0	0	0	1	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0049	2643	2	0	1	0	0	1	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0050	2633	2	1	1	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0051	2637	2	0	0	2	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0052	2641	2	0	0	2	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0053	2639	2	0	0	0	0	2	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0054	2653	2	2	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0055	2647	2	2	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0056	2641	2	0	0	2	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0057	2617	2	1	1	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0058	2617	2	2	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	1/0	t0059	2617	2	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0060	2639	2	1	1	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0061	2643	2	0	1	1	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0062	2637	2	0	1	1	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0063	2627	2	0	2	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0064	2643	2	1	0	0	0	1	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0065	2637	2	0	0	2	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0066	2639	1	0	0	0	0	1	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0067	2645	1	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0068	2617	1	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0069	2619	1	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0070	2629	1	0	0	1	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0071	2637	1	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0072	2635	1	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0073	2635	1	0	0	1	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0074	2639	1	0	0	1	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0075	2631	1	0	0	0	1	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0076	2635	1	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0077	2645	1	0	0	0	0	1	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0078	2635	1	0	0	1	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0079	2641	1	0	0	0	1	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0080	2635	1	0	0	0	0	1	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0081	2633	1	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0082	2647	1	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0083	2641	1	0	0	1	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791