JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZDHHC22_chr14_77126270_77146791	0/0	t0084	2639	1	0	0	1	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0085	2631	1	0	0	1	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0086	2643	1	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0087	2635	1	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0088	2645	1	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0089	2643	1	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0090	2643	1	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0091	2643	1	0	0	0	0	1	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0092	2641	1	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0093	2641	1	0	0	0	0	1	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0094	2635	1	0	0	1	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0095	2633	1	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0096	2641	1	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0097	2617	1	0	0	1	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0098	2647	1	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0099	2647	1	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0100	2639	1	0	0	1	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0101	2635	1	0	1	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0102	2645	1	0	1	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0103	2639	1	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0104	2653	1	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0105	2645	1	0	1	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0106	2641	1	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0107	2643	1	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0108	2637	1	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0109	2635	1	1	0	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0110	2637	1	0	0	1	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0111	2641	1	0	0	0	1	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0112	2645	1	0	0	1	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0113	2641	1	0	1	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0114	2641	1	0	0	1	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0115	2639	1	0	1	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0116	2635	1	0	1	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0117	2627	1	0	0	0	1	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0118	2639	1	0	1	0	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0119	2629	1	0	0	0	0	1	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0120	2643	1	0	0	1	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0121	2641	1	0	0	0	1	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0122	2639	1	0	0	0	0	1	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0123	2635	1	0	0	1	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0124	2639	1	0	0	1	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0125	2639	1	0	0	1	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0126	2641	1	0	0	1	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0127	2644	1	0	0	1	0	0	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC22_chr14_77126270_77146791	0/0	t0128	2643	1	0	0	0	0	1	copy fasta	ZDHHC22	chr14	77126270	77146791
ZDHHC23_chr3_113943013_113968373	0/0	t0001	5039	75	4	12	41	7	11	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	1/1	t0002	5039	66	7	12	37	1	7	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0003	5039	42	16	11	8	2	5	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0004	5039	30	0	10	18	0	2	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0005	5041	17	1	1	14	0	1	copy fasta	ZDHHC23	chr3	113943013	113968373