JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZDHHC23_chr3_113943013_113968373	0/0	t0006	5039	15	11	1	3	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0007	5039	15	3	2	7	0	3	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0008	5041	12	11	1	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0009	5039	11	1	1	6	1	2	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0010	5039	9	0	0	9	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0011	5039	9	0	3	2	1	3	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0012	5039	9	8	0	1	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0013	5039	9	2	2	2	2	1	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0014	5041	8	2	4	2	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0015	5041	7	0	5	0	0	2	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0016	5039	7	0	0	7	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0017	5039	6	0	1	5	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0018	5039	5	0	3	2	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0019	5041	5	5	0	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0020	5039	4	0	0	4	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0021	5039	4	0	0	4	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0022	5039	4	0	4	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0023	5039	4	0	0	4	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0024	5039	4	0	1	3	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0025	5039	3	0	0	3	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0026	5039	3	0	0	0	3	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0027	5041	3	2	1	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0028	5039	3	3	0	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0029	5039	3	3	0	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0030	5039	2	2	0	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0031	5039	2	0	0	2	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0032	5041	2	0	1	1	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0033	5039	2	0	1	1	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0034	5039	2	1	1	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0035	5039	2	2	0	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0036	5041	2	0	0	2	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0037	5039	2	2	0	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0038	5039	1	0	0	0	0	1	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0039	5039	1	1	0	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0040	5041	1	1	0	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0041	5039	1	0	0	1	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0042	5039	1	0	0	0	1	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0043	5039	1	1	0	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0044	5039	1	0	0	0	0	1	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0045	5039	1	0	1	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0046	5041	1	1	0	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0047	5039	1	0	0	0	0	1	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0048	5039	1	1	0	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0049	5039	1	0	0	0	0	1	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0050	5041	1	1	0	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0051	5041	1	0	0	1	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0052	5041	1	1	0	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0053	5041	1	0	0	1	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0054	5039	1	0	1	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0055	5039	1	0	0	1	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373