JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZDHHC23_chr3_113943013_113968373	0/0	t0056	5039	1	0	1	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0057	5039	1	0	0	0	0	1	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0058	5039	1	0	0	1	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0059	5039	1	0	0	1	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0060	5039	1	0	0	1	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0061	5039	1	0	0	1	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0062	5039	1	0	0	1	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0063	5039	1	0	0	1	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0064	5041	1	1	0	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0065	5039	1	0	0	1	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0066	5039	1	0	0	1	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0067	5039	1	1	0	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0068	5039	1	0	0	0	0	1	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0069	5039	1	0	0	1	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0070	5039	1	0	0	1	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0071	5039	1	1	0	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0072	5039	1	0	0	1	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0073	5039	1	0	0	1	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0074	5041	1	0	0	1	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0075	5039	1	0	0	1	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0076	5039	1	1	0	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0077	5039	1	0	1	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0078	5041	1	0	0	0	0	1	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC23_chr3_113943013_113968373	0/0	t0079	5039	1	1	0	0	0	0	copy fasta	ZDHHC23	chr3	113943013	113968373
ZDHHC24_chr11_66530626_66551048	1/0	t0001	3949	114	10	15	67	4	17	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0002	3954	71	22	20	17	6	6	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0003	3944	32	0	5	24	2	1	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0004	3944	19	3	8	1	1	6	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0005	3944	19	1	0	18	0	0	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0006	3954	11	4	0	5	1	1	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0007	3954	8	6	1	1	0	0	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0008	3944	7	0	0	7	0	0	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0009	3954	7	0	0	7	0	0	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0010	3949	6	0	2	0	0	4	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0011	3949	6	6	0	0	0	0	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0012	3944	5	4	1	0	0	0	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0013	3944	5	0	0	5	0	0	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0014	3954	5	5	0	0	0	0	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0015	3959	5	0	0	4	0	1	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0016	3949	4	0	0	4	0	0	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0017	3856	4	0	0	4	0	0	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0018	3954	4	4	0	0	0	0	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0019	3944	3	0	0	2	0	1	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0020	3954	3	1	0	1	0	1	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0021	3954	3	0	0	2	1	0	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0022	3621	3	0	1	0	1	1	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0023	3955	3	3	0	0	0	0	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0024	3954	2	2	0	0	0	0	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0025	3954	2	2	0	0	0	0	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC24_chr11_66530626_66551048	0/0	t0026	3944	2	2	0	0	0	0	copy fasta	ZDHHC24	chr11	66530626	66551048