JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZDHHC24_chr11_66530626_66551048	0/0	t0077	3954	1	1	0	0	0	0	copy fasta	ZDHHC24	chr11	66530626	66551048
ZDHHC2_chr8_17151482_17229799	0/0	t0001	4796	95	24	16	50	1	4	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/1	t0002	4794	79	6	23	29	8	12	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0003	4795	61	9	4	38	0	10	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0004	4796	36	0	10	19	1	6	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0005	4794	27	6	1	16	1	3	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0006	4794	9	8	1	0	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0007	4798	7	1	4	0	0	2	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0008	4794	7	0	0	7	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0009	4793	7	6	1	0	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	1/0	t0010	4821	6	4	1	0	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0011	4795	4	1	0	1	0	2	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0012	4820	4	4	0	0	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0013	4797	4	1	0	3	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0014	4745	3	3	0	0	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0015	4795	3	0	0	3	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0016	4794	3	3	0	0	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0017	4823	2	0	2	0	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0018	4794	2	0	0	2	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0019	4795	2	1	1	0	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0020	4796	1	0	0	1	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0021	4796	1	0	0	1	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0022	4794	1	1	0	0	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0023	4795	1	0	0	1	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0024	4797	1	0	1	0	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0025	4796	1	0	0	0	0	1	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0026	4796	1	0	1	0	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0027	4794	1	0	0	1	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0028	4794	1	0	0	1	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0029	4819	1	1	0	0	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0030	4794	1	0	1	0	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0031	4794	1	0	0	0	0	1	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0032	4794	1	1	0	0	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0033	4795	1	0	0	1	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0034	4795	1	1	0	0	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0035	4795	1	0	0	1	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0036	4794	1	0	0	1	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0037	4795	1	0	0	1	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0038	4795	1	0	0	0	0	1	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0039	4796	1	1	0	0	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0040	4796	1	1	0	0	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0041	4796	1	0	0	1	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0042	4796	1	0	0	1	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0043	4795	1	1	0	0	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0044	4794	1	0	0	1	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0045	4794	1	0	0	0	1	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0046	4820	1	1	0	0	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0047	4822	1	1	0	0	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC2_chr8_17151482_17229799	0/0	t0048	4796	1	0	1	0	0	0	copy fasta	ZDHHC2	chr8	17151482	17229799
ZDHHC3_chr3_44910261_44981174	0/0	t0001	11691	63	2	10	41	1	9	copy fasta	ZDHHC3	chr3	44910261	44981174