JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZDHHC3_chr3_44910261_44981174	0/0	t0002	11694	50	5	20	17	3	5	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0003	11693	19	0	6	7	4	2	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0004	11693	17	0	4	6	1	6	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	1/0	t0005	11695	15	7	6	1	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0006	11694	8	0	0	8	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0007	11694	7	7	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0008	11693	6	6	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0009	11693	6	6	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0010	11693	6	0	2	0	0	4	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0011	11693	6	4	0	2	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0012	11695	5	5	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0013	11692	5	0	0	5	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0014	11691	4	0	3	0	0	1	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0015	11693	4	3	1	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0016	11693	4	4	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0017	11693	4	3	1	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0018	11694	4	0	0	4	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0019	11691	3	1	2	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0020	11693	3	3	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0021	11691	3	0	1	0	2	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0022	11693	3	3	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0023	11692	3	3	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0024	11694	2	2	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0025	11695	2	2	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0026	11693	2	0	0	2	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0027	11695	2	2	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0028	11693	2	2	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0029	11695	2	0	0	1	0	1	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0030	11694	2	2	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0031	11694	2	2	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0032	11693	2	1	1	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0033	11695	1	0	1	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0034	11693	1	1	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0035	11691	1	0	0	1	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0036	11694	1	0	1	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0037	11694	1	1	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0038	11693	1	0	1	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0039	11694	1	1	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0040	11692	1	1	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0041	11249	1	1	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0042	11693	1	1	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0043	11693	1	1	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0044	11693	1	0	0	0	0	1	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0045	11694	1	0	1	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0046	11693	1	0	1	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0047	11693	1	0	0	0	0	1	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0048	11692	1	0	0	1	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0049	11695	1	0	0	1	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0050	11695	1	0	0	1	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0051	11694	1	0	0	1	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174