JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZDHHC3_chr3_44910261_44981174	0/0	t0052	11695	1	1	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0053	11694	1	0	1	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0054	11693	1	1	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0055	11691	1	0	0	0	0	1	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0056	11691	1	0	0	1	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0057	11691	1	0	0	1	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0058	11691	1	0	0	0	0	1	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0059	11691	1	1	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0060	11691	1	0	1	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0061	11691	1	0	1	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0062	11693	1	1	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0063	11693	1	1	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0064	11695	1	0	1	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0065	11694	1	0	0	0	0	1	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0066	11694	1	1	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/1	t0067	11694	1	0	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0068	11695	1	1	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0069	11693	1	1	0	0	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0070	11691	1	0	0	1	0	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0071	11693	1	0	0	0	0	1	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC3_chr3_44910261_44981174	0/0	t0072	11692	1	0	0	0	1	0	copy fasta	ZDHHC3	chr3	44910261	44981174
ZDHHC4_chr7_6572454_6594374	1/1	t0001	672	399	86	79	174	16	42	copy fasta	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	t0002	672	2	0	0	0	0	2	copy fasta	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	t0003	672	2	2	0	0	0	0	copy fasta	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	t0004	672	1	1	0	0	0	0	copy fasta	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	t0005	672	1	0	0	1	0	0	copy fasta	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	t0006	672	1	0	0	1	0	0	copy fasta	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	t0007	672	1	1	0	0	0	0	copy fasta	ZDHHC4	chr7	6572454	6594374
ZDHHC4_chr7_6572454_6594374	0/0	t0008	672	1	0	1	0	0	0	copy fasta	ZDHHC4	chr7	6572454	6594374
ZDHHC5_chr11_57663114_57706182	0/1	t0001	2298	117	20	21	58	3	14	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	t0002	2296	93	33	20	23	6	11	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	1/0	t0003	2296	85	15	27	23	6	13	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	t0004	2296	5	4	1	0	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	t0005	2296	4	3	1	0	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	t0006	2296	3	3	0	0	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	t0007	2298	3	0	0	3	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	t0008	2298	2	0	0	0	0	2	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	t0009	2296	2	2	0	0	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	t0010	2296	1	1	0	0	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	t0011	2296	1	0	1	0	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	t0012	2298	1	0	0	1	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	t0013	2298	1	0	1	0	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	t0014	2296	1	1	0	0	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	t0015	2296	1	1	0	0	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	t0016	2296	1	1	0	0	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	t0017	2298	1	0	0	1	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	t0018	2296	1	0	0	0	1	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC5_chr11_57663114_57706182	0/0	t0019	2296	1	0	0	1	0	0	copy fasta	ZDHHC5	chr11	57663114	57706182
ZDHHC6_chr10_112425300_112451914	0/0	t0001	929	194	37	36	84	8	29	copy fasta	ZDHHC6	chr10	112425300	112451914
ZDHHC6_chr10_112425300_112451914	1/1	t0002	929	170	51	28	70	2	17	copy fasta	ZDHHC6	chr10	112425300	112451914