JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZDHHC6_chr10_112425300_112451914	0/0	t0003	929	36	1	5	28	2	0	copy fasta	ZDHHC6	chr10	112425300	112451914
ZDHHC6_chr10_112425300_112451914	0/0	t0004	929	4	4	0	0	0	0	copy fasta	ZDHHC6	chr10	112425300	112451914
ZDHHC6_chr10_112425300_112451914	0/0	t0005	929	2	2	0	0	0	0	copy fasta	ZDHHC6	chr10	112425300	112451914
ZDHHC6_chr10_112425300_112451914	0/0	t0006	929	1	0	0	1	0	0	copy fasta	ZDHHC6	chr10	112425300	112451914
ZDHHC6_chr10_112425300_112451914	0/0	t0007	929	1	1	0	0	0	0	copy fasta	ZDHHC6	chr10	112425300	112451914
ZDHHC6_chr10_112425300_112451914	0/0	t0008	929	1	0	0	1	0	0	copy fasta	ZDHHC6	chr10	112425300	112451914
ZDHHC6_chr10_112425300_112451914	0/0	t0009	929	1	0	1	0	0	0	copy fasta	ZDHHC6	chr10	112425300	112451914
ZDHHC7_chr16_84969175_85016535	0/0	t0001	2522	89	11	7	63	0	8	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	1/0	t0002	2522	75	7	12	38	4	13	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0003	2522	55	1	22	21	3	8	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0004	2523	45	5	11	19	3	7	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/1	t0005	2522	20	16	3	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0006	2522	16	14	0	0	2	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0007	2522	11	0	0	11	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0008	2522	9	8	1	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0009	2522	8	3	0	3	0	2	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0010	2520	6	3	1	1	0	1	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0011	2522	5	4	1	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0012	2522	4	3	1	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0013	2526	3	3	0	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0014	2522	3	2	1	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0015	2522	3	0	1	0	2	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0016	2522	3	3	0	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0017	2522	3	1	2	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0018	2523	3	0	1	0	1	1	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0019	2522	2	0	0	0	0	2	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0020	2522	2	2	0	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0021	2522	2	0	2	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0022	2522	2	0	2	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0023	2523	2	1	1	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0024	2522	1	1	0	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0025	2522	1	0	0	0	1	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0026	2522	1	0	0	0	0	1	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0027	2523	1	0	0	1	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0028	2522	1	0	0	1	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0029	2522	1	0	1	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0030	2522	1	1	0	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0031	2523	1	0	0	0	1	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0032	2522	1	0	0	1	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0033	2522	1	1	0	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0034	2522	1	1	0	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0035	2522	1	0	0	1	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0036	2522	1	0	0	0	0	1	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0037	2523	1	1	0	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0038	2523	1	1	0	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0039	2522	1	0	1	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0040	2523	1	1	0	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0041	2523	1	0	1	0	0	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC7_chr16_84969175_85016535	0/0	t0042	2522	1	0	0	0	1	0	copy fasta	ZDHHC7	chr16	84969175	85016535
ZDHHC8_chr22_20126804_20153007	1/0	t0001	2752	158	47	25	59	11	15	copy fasta	ZDHHC8	chr22	20126804	20153007