JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZDHHC8_chr22_20126804_20153007	0/0	t0002	2751	81	0	12	55	3	11	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0003	2752	49	24	7	16	0	2	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/1	t0004	2754	19	0	10	0	2	6	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0005	2753	14	2	1	6	0	5	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0006	2755	13	0	0	13	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0007	2752	8	8	0	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0008	2755	5	0	1	3	0	1	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0009	2752	5	0	0	4	0	1	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0010	2752	4	4	0	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0011	2756	3	0	1	1	0	1	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0012	2752	3	0	0	3	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0013	2752	2	0	0	2	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0014	2754	2	0	2	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0015	2752	2	2	0	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0016	2752	2	2	0	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0017	2751	2	0	0	2	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0018	2752	2	2	0	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0019	2755	1	0	1	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0020	2755	1	0	0	1	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0021	2752	1	0	0	1	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0022	2753	1	1	0	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0023	2752	1	1	0	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0024	2752	1	0	0	1	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0025	2752	1	0	1	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0026	2752	1	0	0	0	0	1	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0027	2752	1	0	0	1	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0028	2752	1	0	1	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0029	2752	1	1	0	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0030	2752	1	0	0	1	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0031	2752	1	1	0	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0032	2752	1	0	0	0	0	1	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0033	2754	1	0	0	0	0	1	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0034	2752	1	0	0	0	0	1	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0035	2752	1	1	0	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0036	2752	1	0	0	1	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0037	2752	1	1	0	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0038	2753	1	0	0	1	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0039	2753	1	1	0	0	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0040	2751	1	0	0	1	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0041	2751	1	0	0	1	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0042	2751	1	0	0	1	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0043	2751	1	0	0	1	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0044	2752	1	0	0	1	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0045	2751	1	0	0	1	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0046	2751	1	0	0	1	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0047	2767	1	0	0	1	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC8_chr22_20126804_20153007	0/0	t0048	2751	1	0	0	1	0	0	copy fasta	ZDHHC8	chr22	20126804	20153007
ZDHHC9_chrX_129798288_129848886	0/1	t0001	3477	95	12	19	48	5	10	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	1/0	t0002	3477	70	16	3	41	0	9	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0003	3477	16	8	0	8	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886