JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
ZDHHC9_chrX_129798288_129848886	0/0	t0004	3477	15	14	1	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0005	3478	8	0	0	8	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0006	3477	7	5	2	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0007	3477	6	0	4	0	2	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0008	3476	5	5	0	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0009	3477	3	3	0	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0010	3477	3	0	0	3	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0011	3477	3	0	0	3	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0012	3478	2	2	0	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0013	3479	2	1	1	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0014	3478	1	1	0	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0015	3477	1	0	0	1	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0016	3485	1	0	0	1	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0017	3478	1	0	1	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0018	3477	1	1	0	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0019	3479	1	0	0	1	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0020	3475	1	0	0	1	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0021	3477	1	0	0	1	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0022	3477	1	0	0	1	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0023	3477	1	1	0	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0024	3476	1	1	0	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0025	3477	1	0	0	0	1	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0026	3477	1	1	0	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0027	3477	1	0	1	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0028	3477	1	1	0	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0029	3475	1	0	0	1	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0030	3477	1	1	0	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0031	3477	1	1	0	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0032	3477	1	1	0	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0033	3477	1	0	0	1	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0034	3479	1	1	0	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0035	3481	1	1	0	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZDHHC9_chrX_129798288_129848886	0/0	t0036	3477	1	1	0	0	0	copy fasta	ZDHHC9	chrX	129798288	129848886
ZEB1_chr10_31314216_31534804	1/1	t0001	2560	25	3	6	11	3	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0002	2558	20	2	0	18	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0003	2556	19	13	2	2	2	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0004	2564	16	1	3	9	3	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0005	2554	15	10	2	0	3	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0006	2562	13	1	2	8	2	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0007	2556	12	9	3	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0008	2554	7	7	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0009	2556	7	0	0	7	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0010	2562	7	5	2	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0011	2560	6	1	0	4	1	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0012	2562	5	5	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0013	2544	4	0	0	4	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0014	2560	4	4	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0015	2562	4	4	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0016	2552	3	2	1	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0017	2554	3	3	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804