JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZEB1_chr10_31314216_31534804	0/0	t0018	2556	3	2	1	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0019	2558	3	0	0	2	0	1	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0020	2558	3	3	0	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0021	2566	3	0	0	3	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0022	2554	2	2	0	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0023	2560	2	2	0	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0024	2558	1	1	0	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0025	2550	1	0	1	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0026	2552	1	0	0	1	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0027	2556	1	1	0	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0028	2556	1	0	0	1	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0029	2558	1	1	0	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0030	2558	1	1	0	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0031	2560	1	1	0	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0032	2562	1	0	0	0	0	1	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0033	2562	1	0	0	1	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0034	2564	1	1	0	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0035	2564	1	1	0	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0036	2564	1	0	1	0	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB1_chr10_31314216_31534804	0/0	t0037	2570	1	0	0	1	0	0	copy fasta	ZEB1	chr10	31314216	31534804
ZEB2_chr2_144379081_144525119	0/1	t0001	5623	107	22	11	49	3	21	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0002	5621	23	11	4	1	1	6	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0003	5622	19	7	3	7	0	2	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0004	5623	13	0	0	13	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0005	5622	11	0	3	8	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0006	5623	7	1	4	0	1	1	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0007	5619	5	5	0	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0008	5624	5	1	1	2	1	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0009	5624	4	1	1	2	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0010	5654	4	4	0	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0011	5620	4	4	0	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0012	5653	2	2	0	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0013	5620	2	2	0	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0014	5653	2	2	0	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0015	5623	2	0	0	2	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0016	5622	2	0	0	0	0	2	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0017	5623	2	1	1	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0018	5624	2	0	2	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0019	5625	2	0	0	2	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	1/0	t0020	5621	2	1	0	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0021	5623	2	1	1	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0022	5623	1	1	0	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0023	5624	1	1	0	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0024	5623	1	1	0	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0025	5622	1	0	0	1	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0026	5655	1	1	0	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0027	5651	1	1	0	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0028	5654	1	0	1	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0029	5622	1	0	0	0	0	1	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0030	5623	1	1	0	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119