JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZEB2_chr2_144379081_144525119	0/0	t0031	5623	1	0	0	1	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0032	5623	1	1	0	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0033	5655	1	1	0	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0034	5624	1	0	0	0	0	1	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0035	5623	1	0	1	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0036	5623	1	0	0	0	0	1	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0037	5654	1	1	0	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0038	5621	1	0	0	0	0	1	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0039	5622	1	0	0	1	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0040	5625	1	0	0	1	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0041	5623	1	0	0	1	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0042	5622	1	0	0	1	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0043	5623	1	0	0	1	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0044	5623	1	0	1	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0045	5627	1	1	0	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0046	5623	1	0	0	1	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZEB2_chr2_144379081_144525119	0/0	t0047	5654	1	1	0	0	0	0	copy fasta	ZEB2	chr2	144379081	144525119
ZER1_chr9_128724786_128776927	0/0	t0001	1993	167	52	29	62	3	21	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/1	t0002	1993	94	6	29	37	4	17	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	t0003	1993	24	1	1	18	1	3	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	t0004	1977	10	0	0	9	0	1	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	t0005	1993	7	2	0	5	0	0	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	t0006	1993	5	4	0	1	0	0	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	t0007	1993	5	5	0	0	0	0	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	t0008	1993	4	3	1	0	0	0	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	t0009	1993	3	3	0	0	0	0	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	t0010	1993	2	2	0	0	0	0	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	1/0	t0011	1993	2	1	0	0	0	0	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	t0012	1993	1	1	0	0	0	0	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	t0013	1993	1	1	0	0	0	0	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	t0014	1977	1	0	0	0	0	1	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	t0015	1993	1	1	0	0	0	0	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	t0016	1977	1	0	0	1	0	0	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	t0017	1993	1	0	0	0	0	1	copy fasta	ZER1	chr9	128724786	128776927
ZER1_chr9_128724786_128776927	0/0	t0018	1977	1	0	0	1	0	0	copy fasta	ZER1	chr9	128724786	128776927
ZFAND1_chr8_81696337_81726300	0/1	t0001	1378	169	59	35	47	6	21	copy fasta	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	t0002	1379	97	1	12	78	3	3	copy fasta	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	t0003	1379	43	19	8	9	1	6	copy fasta	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	1/0	t0004	1378	34	16	3	11	1	2	copy fasta	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	t0005	1379	19	0	0	17	0	2	copy fasta	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	t0006	1378	5	0	3	0	1	1	copy fasta	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	t0007	1378	2	0	2	0	0	0	copy fasta	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	t0008	1379	1	0	0	1	0	0	copy fasta	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	t0009	1379	1	0	0	1	0	0	copy fasta	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	t0010	1378	1	0	0	1	0	0	copy fasta	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	t0011	1378	1	0	0	0	0	1	copy fasta	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	t0012	1378	1	0	0	1	0	0	copy fasta	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	t0013	1378	1	1	0	0	0	0	copy fasta	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	t0014	1378	1	0	1	0	0	0	copy fasta	ZFAND1	chr8	81696337	81726300
ZFAND1_chr8_81696337_81726300	0/0	t0015	1378	1	1	0	0	0	0	copy fasta	ZFAND1	chr8	81696337	81726300