JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFAND1_chr8_81696337_81726300	0/0	t0016	1378	1	1	0	0	0	0	copy fasta	ZFAND1	chr8	81696337	81726300
ZFAND2A_chr7_1147907_1165196	1/0	t0001	441	183	28	27	95	9	23	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/1	t0002	441	126	23	32	56	4	10	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	t0003	441	79	32	4	40	1	2	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	t0004	441	30	6	12	3	2	7	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	t0005	441	2	2	0	0	0	0	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	t0006	441	2	2	0	0	0	0	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	t0007	441	2	0	0	0	2	0	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	t0008	441	1	0	0	1	0	0	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	t0009	441	1	1	0	0	0	0	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	t0010	441	1	0	0	1	0	0	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	t0011	441	1	0	0	0	0	1	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	t0012	441	1	0	0	1	0	0	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	t0013	441	1	0	0	1	0	0	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	t0014	441	1	0	0	0	0	1	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2A_chr7_1147907_1165196	0/0	t0015	441	1	0	1	0	0	0	copy fasta	ZFAND2A	chr7	1147907	1165196
ZFAND2B_chr2_219201782_219214648	1/1	t0001	549	415	92	82	177	16	46	copy fasta	ZFAND2B	chr2	219201782	219214648
ZFAND2B_chr2_219201782_219214648	0/0	t0002	549	1	0	0	1	0	0	copy fasta	ZFAND2B	chr2	219201782	219214648
ZFAND3_chr6_37814727_38159624	1/0	t0001	2455	205	64	37	71	10	22	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0002	2456	23	0	0	23	0	0	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0003	2453	11	0	3	3	1	4	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0004	2455	8	8	0	0	0	0	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0005	2455	8	5	3	0	0	0	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0006	2455	8	0	2	3	0	3	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0007	2455	6	2	3	0	1	0	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0008	2455	6	1	0	5	0	0	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0009	2455	6	0	2	0	2	2	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0010	2456	4	0	0	4	0	0	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0011	2456	3	0	0	2	1	0	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0012	2474	3	0	1	0	1	1	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0013	2455	2	2	0	0	0	0	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0014	2455	2	0	1	0	0	1	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0015	2455	2	0	1	0	0	1	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0016	2455	2	1	1	0	0	0	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0017	2455	1	0	0	1	0	0	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0018	2455	1	0	0	0	0	1	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0019	2455	1	0	0	1	0	0	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0020	2455	1	1	0	0	0	0	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0021	2455	1	0	0	0	0	1	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0022	2455	1	0	0	0	0	1	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/1	t0023	2455	1	0	0	0	0	0	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0024	2455	1	1	0	0	0	0	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0025	2455	1	1	0	0	0	0	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0026	2455	1	1	0	0	0	0	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0027	2455	1	1	0	0	0	0	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0028	2455	1	1	0	0	0	0	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0029	2455	1	1	0	0	0	0	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0030	2456	1	0	0	0	0	1	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0031	2456	1	0	0	1	0	0	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0032	2456	1	0	0	1	0	0	copy fasta	ZFAND3	chr6	37814727	38159624