JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFAND3_chr6_37814727_38159624	0/0	t0033	2456	1	1	0	0	0	0	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0034	2455	1	0	0	1	0	0	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND3_chr6_37814727_38159624	0/0	t0035	2455	1	1	0	0	0	0	copy fasta	ZFAND3	chr6	37814727	38159624
ZFAND4_chr10_45610500_45677772	1/1	t0001	1577	246	69	58	82	9	26	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	t0002	1577	76	7	12	46	1	10	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	t0003	1577	40	10	1	24	3	2	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	t0004	1577	14	0	3	11	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	t0005	1577	3	0	0	3	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	t0006	1577	3	0	0	3	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	t0007	1577	2	0	0	2	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	t0008	1577	2	0	1	0	1	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	t0009	1577	1	0	0	1	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	t0010	1577	1	0	0	0	0	1	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	t0011	1577	1	0	1	0	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	t0012	1577	1	0	0	0	1	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	t0013	1577	1	0	0	0	1	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	t0014	1577	1	1	0	0	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	t0015	1577	1	0	0	0	0	1	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	t0016	1577	1	1	0	0	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	t0017	1577	1	0	0	1	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	t0018	1577	1	0	0	1	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	t0019	1577	1	0	1	0	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND4_chr10_45610500_45677772	0/0	t0020	1577	1	0	1	0	0	0	copy fasta	ZFAND4	chr10	45610500	45677772
ZFAND5_chr9_72346413_72370208	0/0	t0001	5209	126	3	28	80	5	10	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0002	5208	88	21	12	48	2	5	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0003	5206	19	0	1	18	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0004	5210	19	10	2	5	0	2	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0005	5209	17	5	5	3	2	2	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/1	t0006	5208	11	1	8	0	1	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	1/0	t0007	5200	8	7	0	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0008	5206	8	7	1	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0009	5210	6	0	5	0	1	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0010	5206	6	2	3	0	1	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0011	5208	5	5	0	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0012	5204	4	4	0	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0013	5208	4	4	0	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0014	5208	4	0	0	4	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0015	5206	4	2	2	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0016	5205	3	3	0	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0017	5203	3	0	0	2	1	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0018	5208	3	3	0	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0019	5209	3	0	0	0	0	3	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0020	5209	2	0	0	2	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0021	5205	2	2	0	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0022	5209	2	0	0	1	0	1	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0023	5204	2	2	0	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0024	5208	2	2	0	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0025	5208	2	0	0	0	0	2	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0026	5205	2	0	0	1	0	1	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0027	5209	1	0	0	1	0	0	copy fasta	ZFAND5	chr9	72346413	72370208