JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFAND5_chr9_72346413_72370208	0/0	t0028	5208	1	0	1	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0029	5210	1	0	0	0	0	1	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0030	5200	1	1	0	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0031	5205	1	1	0	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0032	5204	1	1	0	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0033	5205	1	1	0	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0034	5207	1	1	0	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0035	5208	1	1	0	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0036	5209	1	0	1	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0037	5209	1	0	1	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0038	5209	1	0	1	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0039	5209	1	0	0	1	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0040	5209	1	0	0	1	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0041	5205	1	1	0	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0042	5206	1	1	0	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0043	5207	1	1	0	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0044	5209	1	0	0	0	0	1	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0045	5202	1	1	0	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0046	5209	1	0	0	1	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0047	5208	1	1	0	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0048	5208	1	0	0	1	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0049	5204	1	1	0	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0050	5206	1	0	0	1	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0051	5208	1	0	1	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0052	5208	1	0	1	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0053	5208	1	0	0	1	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0054	5203	1	0	1	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0055	5211	1	0	0	1	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0056	5209	1	0	0	0	0	1	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0057	5211	1	1	0	0	0	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0058	5209	1	0	0	0	1	0	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND5_chr9_72346413_72370208	0/0	t0059	5208	1	0	0	0	0	1	copy fasta	ZFAND5	chr9	72346413	72370208
ZFAND6_chr15_80054676_80143393	1/1	t0001	1080	352	79	68	146	17	40	copy fasta	ZFAND6	chr15	80054676	80143393
ZFAND6_chr15_80054676_80143393	0/0	t0002	1080	6	4	2	0	0	0	copy fasta	ZFAND6	chr15	80054676	80143393
ZFAND6_chr15_80054676_80143393	0/0	t0003	1081	5	5	0	0	0	0	copy fasta	ZFAND6	chr15	80054676	80143393
ZFAND6_chr15_80054676_80143393	0/0	t0004	1080	2	2	0	0	0	0	copy fasta	ZFAND6	chr15	80054676	80143393
ZFAND6_chr15_80054676_80143393	0/0	t0005	1080	2	0	0	0	0	2	copy fasta	ZFAND6	chr15	80054676	80143393
ZFAND6_chr15_80054676_80143393	0/0	t0006	1080	1	0	0	1	0	0	copy fasta	ZFAND6	chr15	80054676	80143393
ZFAND6_chr15_80054676_80143393	0/0	t0007	1080	1	0	0	0	1	0	copy fasta	ZFAND6	chr15	80054676	80143393
ZFAND6_chr15_80054676_80143393	0/0	t0008	1081	1	1	0	0	0	0	copy fasta	ZFAND6	chr15	80054676	80143393
ZFAND6_chr15_80054676_80143393	0/0	t0009	1080	1	1	0	0	0	0	copy fasta	ZFAND6	chr15	80054676	80143393
ZFAND6_chr15_80054676_80143393	0/0	t0010	1080	1	0	0	1	0	0	copy fasta	ZFAND6	chr15	80054676	80143393
ZFAND6_chr15_80054676_80143393	0/0	t0011	1080	1	0	0	1	0	0	copy fasta	ZFAND6	chr15	80054676	80143393
ZFAND6_chr15_80054676_80143393	0/0	t0012	1080	1	0	0	1	0	0	copy fasta	ZFAND6	chr15	80054676	80143393
ZFAT_chr8_134472788_134718031	0/1	t0001	863	180	61	33	58	7	20	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	1/0	t0002	863	78	12	17	32	4	12	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	t0003	863	4	0	3	0	1	0	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	t0004	863	4	0	0	4	0	0	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	t0005	863	2	0	2	0	0	0	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	t0006	863	2	1	1	0	0	0	copy fasta	ZFAT	chr8	134472788	134718031