JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFAT_chr8_134472788_134718031	0/0	t0007	863	2	2	0	0	0	0	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	t0008	863	1	1	0	0	0	0	copy fasta	ZFAT	chr8	134472788	134718031
ZFAT_chr8_134472788_134718031	0/0	t0009	863	1	1	0	0	0	0	copy fasta	ZFAT	chr8	134472788	134718031
ZFC3H1_chr12_71604599_71668848	1/1	t0001	1068	305	73	41	137	14	38	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	t0002	1068	13	13	0	0	0	0	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	t0003	1068	2	1	1	0	0	0	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	t0004	1068	1	0	1	0	0	0	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	t0005	1068	1	1	0	0	0	0	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	t0006	1068	1	0	0	1	0	0	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFC3H1_chr12_71604599_71668848	0/0	t0007	1068	1	0	1	0	0	0	copy fasta	ZFC3H1	chr12	71604599	71668848
ZFHX2_chr14_23515857_23556765	0/0	t0001	1578	184	23	34	96	7	24	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	1/0	t0002	1578	40	3	15	14	2	5	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0003	1577	37	2	12	18	2	3	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0004	1579	29	27	1	0	0	1	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0005	1577	28	1	2	17	0	8	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0006	1578	10	10	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0007	1578	5	5	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0008	1578	5	4	1	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/1	t0009	1577	3	0	0	0	2	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0010	1578	3	0	0	3	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0011	1577	2	0	0	2	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0012	1577	2	0	0	2	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0013	1578	2	1	1	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0014	1578	2	2	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0015	1577	2	0	1	0	0	1	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0016	1579	2	2	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0017	1579	2	2	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0018	1579	2	2	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0019	1578	2	0	0	2	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0020	1578	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0021	1578	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0022	1577	1	0	0	1	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0023	1578	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0024	1577	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0025	1578	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0026	1577	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0027	1577	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0028	1577	1	0	0	1	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0029	1577	1	0	0	1	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0030	1578	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0031	1577	1	0	0	1	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0032	1577	1	0	0	1	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0033	1579	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0034	1578	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0035	1579	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0036	1578	1	0	1	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0037	1578	1	0	0	1	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0038	1578	1	0	1	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0039	1578	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0040	1578	1	0	0	1	0	0	copy fasta	ZFHX2	chr14	23515857	23556765