JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFHX2_chr14_23515857_23556765	0/0	t0041	1578	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0042	1578	1	0	0	0	1	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0043	1579	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0044	1579	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0045	1579	1	1	0	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0046	1578	1	0	1	0	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX2_chr14_23515857_23556765	0/0	t0047	1578	1	0	0	1	0	0	copy fasta	ZFHX2	chr14	23515857	23556765
ZFHX3_chr16_72777885_73053128	1/0	t0001	4706	79	13	23	19	8	15	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/1	t0002	4702	25	24	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0003	4703	24	1	6	16	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0004	4707	17	0	0	16	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0005	4707	13	0	5	5	2	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0006	4707	8	1	4	1	0	2	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0007	4703	6	1	0	2	0	3	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0008	4711	5	2	3	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0009	4707	5	4	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0010	4707	4	4	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0011	4706	4	0	0	4	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0012	4707	3	0	3	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0013	4706	3	0	2	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0014	4707	2	0	0	2	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0015	4704	2	0	1	0	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0016	4703	2	0	0	2	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0017	4708	2	0	0	2	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0018	4703	2	2	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0019	4702	2	1	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0020	4706	2	0	2	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0021	4705	2	2	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0022	4683	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0023	4710	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0024	4709	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0025	4707	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0026	4708	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0027	4708	1	0	0	0	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0028	4703	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0029	4703	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0030	4703	1	0	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0031	4722	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0032	4703	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0033	4702	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0034	4704	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0035	4704	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0036	4707	1	0	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0037	4706	1	0	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0038	4702	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0039	4707	1	0	0	0	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0040	4707	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0041	4707	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0042	4708	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0043	4702	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128