JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFHX3_chr16_72777885_73053128	0/0	t0044	4701	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0045	4702	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0046	4702	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0047	4706	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0048	4706	1	0	0	0	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0049	4707	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0050	4722	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0051	4707	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0052	4700	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0053	4705	1	0	0	0	0	1	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0054	4709	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0055	4709	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0056	4707	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0057	4708	1	0	1	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0058	4704	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0059	4707	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0060	4703	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0061	4705	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0062	4706	1	0	0	1	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX3_chr16_72777885_73053128	0/0	t0063	4702	1	1	0	0	0	0	copy fasta	ZFHX3	chr16	72777885	73053128
ZFHX4_chr8_76676247_76872281	0/0	t0001	3138	55	42	4	3	0	6	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/1	t0002	3137	51	8	8	26	1	7	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	t0003	3135	47	2	0	44	1	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	t0004	3137	25	2	4	19	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	1/0	t0005	3137	24	9	5	5	0	4	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	t0006	3137	13	4	1	8	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	t0007	3136	6	5	1	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	t0008	3139	4	3	0	0	0	1	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	t0009	3139	3	0	2	0	1	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	t0010	3137	3	3	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	t0011	3138	2	0	2	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	t0012	3137	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	t0013	3138	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	t0014	3138	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	t0015	3138	1	1	0	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	t0016	3138	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	t0017	3134	1	0	1	0	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	t0018	3135	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	t0019	3137	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	t0020	3137	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	t0021	3135	1	0	0	1	0	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFHX4_chr8_76676247_76872281	0/0	t0022	3138	1	0	0	0	1	0	copy fasta	ZFHX4	chr8	76676247	76872281
ZFP14_chr19_36329453_36384201	1/0	t0001	5890	92	21	10	47	3	10	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/1	t0002	5892	78	9	16	36	2	14	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0003	5905	48	1	16	28	3	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0004	5890	19	1	9	8	0	1	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0005	5906	9	9	0	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0006	5892	9	9	0	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0007	5902	8	8	0	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0008	5888	7	7	0	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201