JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFP14_chr19_36329453_36384201	0/0	t0009	5904	7	7	0	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0010	5906	6	0	1	1	1	3	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0011	5891	6	1	4	0	1	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0012	5893	6	2	1	2	0	1	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0013	5892	6	0	0	6	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0014	5891	5	2	1	2	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0015	5919	4	0	3	0	0	1	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0016	5905	3	0	0	3	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0017	5892	3	2	1	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0018	5889	3	2	1	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0019	5893	3	0	0	3	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0020	5894	3	2	1	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0021	5892	3	0	0	3	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0022	5908	2	2	0	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0023	5891	2	0	0	2	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0024	5892	2	0	1	0	1	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0025	5892	2	2	0	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0026	5892	2	2	0	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0027	5892	1	0	0	1	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0028	5892	1	1	0	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0029	5890	1	0	0	1	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0030	5888	1	0	0	1	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0031	5889	1	0	0	1	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0032	5890	1	0	0	1	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0033	5890	1	0	0	0	1	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0034	5889	1	0	1	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0035	5905	1	0	0	1	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0036	5905	1	0	0	1	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0037	5904	1	0	1	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0038	5893	1	1	0	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0039	5890	1	0	0	1	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0040	5891	1	1	0	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0041	5890	1	0	0	0	0	1	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0042	5891	1	1	0	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0043	5907	1	0	1	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0044	5899	1	1	0	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0045	5893	1	1	0	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0046	5894	1	0	0	1	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0047	5891	1	0	0	1	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0048	5892	1	0	0	1	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0049	5894	1	0	0	1	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0050	5901	1	1	0	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0051	5892	1	0	0	1	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0052	5893	1	0	0	1	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0053	5891	1	0	0	1	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0054	5893	1	0	0	0	0	1	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0055	5891	1	1	0	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP14_chr19_36329453_36384201	0/0	t0056	5902	1	1	0	0	0	0	copy fasta	ZFP14	chr19	36329453	36384201
ZFP1_chr16_75143524_75177234	0/0	t0001	2094	94	1	13	58	2	20	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/1	t0002	2094	89	20	34	22	3	9	copy fasta	ZFP1	chr16	75143524	75177234