JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C1orf116_chr1_207013522_207037756	0/0	t0041	3696	1	0	0	1	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	t0042	3696	1	1	0	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	t0043	3696	1	1	0	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	t0044	3696	1	1	0	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	t0045	3696	1	0	1	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	t0046	3696	1	1	0	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf122_chr1_37802790_37814454	1/1	t0001	997	415	86	73	200	13	41	copy fasta	C1orf122	chr1	37802790	37814454
C1orf122_chr1_37802790_37814454	0/0	t0002	997	2	0	2	0	0	0	copy fasta	C1orf122	chr1	37802790	37814454
C1orf122_chr1_37802790_37814454	0/0	t0003	997	1	0	0	0	0	1	copy fasta	C1orf122	chr1	37802790	37814454
C1orf122_chr1_37802790_37814454	0/0	t0004	997	1	0	1	0	0	0	copy fasta	C1orf122	chr1	37802790	37814454
C1orf122_chr1_37802790_37814454	0/0	t0005	997	1	0	0	0	1	0	copy fasta	C1orf122	chr1	37802790	37814454
C1orf127_chr1_10941475_10987076	0/1	t0001	327	273	43	54	133	12	30	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	1/0	t0002	327	31	3	10	12	3	2	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	t0003	328	28	2	8	15	1	2	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	t0004	327	22	17	0	2	0	3	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	t0005	327	11	10	1	0	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	t0006	327	8	8	0	0	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	t0007	328	7	0	1	3	0	3	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	t0008	328	3	3	0	0	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	t0009	327	3	3	0	0	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	t0010	327	3	0	0	3	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	t0011	328	2	2	0	0	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	t0012	328	1	1	0	0	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf131_chr1_231218765_231246175	1/1	t0001	549	425	88	72	203	16	44	copy fasta	C1orf131	chr1	231218765	231246175
C1orf131_chr1_231218765_231246175	0/0	t0002	549	14	10	0	0	2	2	copy fasta	C1orf131	chr1	231218765	231246175
C1orf131_chr1_231218765_231246175	0/0	t0003	549	2	0	0	2	0	0	copy fasta	C1orf131	chr1	231218765	231246175
C1orf131_chr1_231218765_231246175	0/0	t0004	549	1	0	0	1	0	0	copy fasta	C1orf131	chr1	231218765	231246175
C1orf141_chr1_67087165_67139970	0/0	t0001	985	195	51	39	77	10	18	copy fasta	C1orf141	chr1	67087165	67139970
C1orf141_chr1_67087165_67139970	0/0	t0002	985	34	17	3	11	1	2	copy fasta	C1orf141	chr1	67087165	67139970
C1orf141_chr1_67087165_67139970	0/0	t0003	985	23	2	7	10	1	3	copy fasta	C1orf141	chr1	67087165	67139970
C1orf141_chr1_67087165_67139970	1/1	t0004	985	16	2	3	4	5	0	copy fasta	C1orf141	chr1	67087165	67139970
C1orf141_chr1_67087165_67139970	0/0	t0005	985	14	13	1	0	0	0	copy fasta	C1orf141	chr1	67087165	67139970
C1orf141_chr1_67087165_67139970	0/0	t0006	980	4	1	2	0	1	0	copy fasta	C1orf141	chr1	67087165	67139970
C1orf141_chr1_67087165_67139970	0/0	t0007	986	4	4	0	0	0	0	copy fasta	C1orf141	chr1	67087165	67139970
C1orf141_chr1_67087165_67139970	0/0	t0008	985	3	0	0	3	0	0	copy fasta	C1orf141	chr1	67087165	67139970
C1orf141_chr1_67087165_67139970	0/0	t0009	985	2	2	0	0	0	0	copy fasta	C1orf141	chr1	67087165	67139970
C1orf141_chr1_67087165_67139970	0/0	t0010	985	1	0	0	1	0	0	copy fasta	C1orf141	chr1	67087165	67139970
C1orf141_chr1_67087165_67139970	0/0	t0011	985	1	1	0	0	0	0	copy fasta	C1orf141	chr1	67087165	67139970
C1orf141_chr1_67087165_67139970	0/0	t0012	985	1	0	0	0	0	1	copy fasta	C1orf141	chr1	67087165	67139970
C1orf141_chr1_67087165_67139970	0/0	t0013	980	1	0	1	0	0	0	copy fasta	C1orf141	chr1	67087165	67139970
C1orf141_chr1_67087165_67139970	0/0	t0014	986	1	1	0	0	0	0	copy fasta	C1orf141	chr1	67087165	67139970
C1orf146_chr1_92212915_92250813	1/1	t0001	313	275	81	57	94	12	29	copy fasta	C1orf146	chr1	92212915	92250813
C1orf146_chr1_92212915_92250813	0/0	t0002	313	3	0	2	0	0	1	copy fasta	C1orf146	chr1	92212915	92250813
C1orf146_chr1_92212915_92250813	0/0	t0003	313	2	1	1	0	0	0	copy fasta	C1orf146	chr1	92212915	92250813
C1orf159_chr1_1076823_1121089	0/1	t0001	1236	146	10	33	84	3	15	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	t0002	1236	56	12	4	23	4	13	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	1/0	t0003	1236	55	18	8	11	5	12	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	t0004	1236	12	11	1	0	0	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	t0005	1236	11	8	2	1	0	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	t0006	1236	11	9	2	0	0	0	copy fasta	C1orf159	chr1	1076823	1121089