JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFP1_chr16_75143524_75177234	1/0	t0003	2064	35	4	2	23	3	2	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0004	2094	29	0	6	10	3	10	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0005	2094	18	17	0	1	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0006	2064	17	14	3	0	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0007	2064	13	1	8	1	0	3	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0008	2094	10	10	0	0	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0009	2064	10	8	1	0	0	1	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0010	2094	8	1	4	0	3	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0011	2094	7	0	0	7	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0012	2094	5	4	0	0	1	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0013	2094	3	2	0	0	0	1	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0014	2064	2	0	0	2	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0015	2094	2	0	0	2	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0016	2064	2	0	0	2	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0017	2094	2	0	0	2	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0018	2094	2	0	0	0	1	1	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0019	2064	2	2	0	0	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0020	2094	2	2	0	0	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0021	2094	1	0	1	0	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0022	2094	1	0	1	0	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0023	2064	1	0	0	0	0	1	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0024	2064	1	1	0	0	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0025	2064	1	1	0	0	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0026	2094	1	1	0	0	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0027	2094	1	1	0	0	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0028	2094	1	0	1	0	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0029	2064	1	1	0	0	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0030	2064	1	1	0	0	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0031	2064	1	1	0	0	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP1_chr16_75143524_75177234	0/0	t0032	2064	1	1	0	0	0	0	copy fasta	ZFP1	chr16	75143524	75177234
ZFP28_chr19_56533948_56561808	1/1	t0001	1488	245	15	55	134	12	27	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	t0002	1484	74	30	5	35	0	4	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	t0003	1484	62	20	12	16	5	9	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	t0004	1484	19	10	5	0	0	4	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	t0005	1484	14	13	1	0	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	t0006	1484	5	5	0	0	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	t0007	1484	5	0	4	0	1	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	t0008	1488	4	4	0	0	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	t0009	1488	2	0	0	2	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	t0010	1488	2	0	0	2	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	t0011	1488	1	0	0	1	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP28_chr19_56533948_56561808	0/0	t0012	1484	1	1	0	0	0	0	copy fasta	ZFP28	chr19	56533948	56561808
ZFP2_chr5_178890913_178938212	0/1	t0001	1026	143	26	32	64	8	12	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	1/0	t0002	1025	86	16	21	22	8	18	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	t0003	1025	65	3	3	48	0	11	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	t0004	1025	31	2	5	24	0	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	t0005	1025	17	13	2	2	0	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	t0006	1025	9	9	0	0	0	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	t0007	1025	9	8	1	0	0	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	t0008	1026	9	0	0	8	0	1	copy fasta	ZFP2	chr5	178890913	178938212