JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFP2_chr5_178890913_178938212	0/0	t0009	1025	7	1	5	0	1	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	t0010	1025	3	2	0	0	1	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	t0011	1025	3	0	0	3	0	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	t0012	1026	2	0	0	2	0	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	t0013	1025	1	0	1	0	0	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	t0014	1025	1	0	0	1	0	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	t0015	1026	1	0	0	1	0	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	t0016	1025	1	1	0	0	0	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	t0017	1026	1	0	0	0	0	1	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	t0018	1025	1	0	0	1	0	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	t0019	1025	1	1	0	0	0	0	copy fasta	ZFP2	chr5	178890913	178938212
ZFP2_chr5_178890913_178938212	0/0	t0020	1026	1	0	0	0	0	1	copy fasta	ZFP2	chr5	178890913	178938212
ZFP30_chr19_37626006_37660465	0/0	t0001	4266	117	19	3	83	1	11	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0002	4267	45	18	8	18	0	1	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0003	4266	40	4	8	14	6	8	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/1	t0004	4268	23	1	9	6	2	4	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	1/0	t0005	4267	18	0	7	7	2	1	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0006	4265	15	6	3	5	0	1	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0007	4264	11	0	6	4	0	1	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0008	4264	8	8	0	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0009	4267	8	0	3	2	3	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0010	4269	7	3	3	0	1	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0011	4267	6	1	1	4	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0012	4266	6	6	0	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0013	4266	6	0	0	6	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0014	4266	4	0	0	4	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0015	4267	4	4	0	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0016	4268	4	2	2	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0017	4267	3	1	1	1	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0018	4267	3	0	0	3	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0019	4264	3	2	1	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0020	4266	3	0	1	1	0	1	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0021	4266	3	1	1	1	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0022	4267	3	0	0	3	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0023	4268	3	0	2	0	0	1	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0024	4266	2	2	0	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0025	4265	2	2	0	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0026	4266	2	2	0	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0027	4268	2	0	0	0	0	2	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0028	4266	2	0	0	0	0	2	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0029	4266	1	0	0	1	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0030	4264	1	1	0	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0031	4266	1	0	0	1	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0032	4267	1	0	1	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0033	4266	1	0	0	1	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0034	4266	1	0	1	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0035	4267	1	0	1	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0036	4265	1	0	1	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0037	4266	1	0	0	0	0	1	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0038	4266	1	0	0	1	0	0	copy fasta	ZFP30	chr19	37626006	37660465