JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFP30_chr19_37626006_37660465	0/0	t0039	4266	1	0	1	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0040	4266	1	0	1	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0041	4264	1	0	0	0	0	1	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0042	4267	1	0	0	1	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0043	4268	1	1	0	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0044	4267	1	0	1	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0045	4264	1	1	0	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0046	4266	1	0	0	1	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0047	4266	1	0	1	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0048	4268	1	0	1	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0049	4268	1	0	1	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0050	4267	1	0	0	0	1	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0051	4268	1	0	0	1	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0052	4265	1	1	0	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0053	4265	1	1	0	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0054	4267	1	1	0	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0055	4267	1	1	0	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0056	4266	1	0	0	1	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0057	4266	1	1	0	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0058	4266	1	0	0	0	0	1	copy fasta	ZFP30	chr19	37626006	37660465
ZFP30_chr19_37626006_37660465	0/0	t0059	4268	1	0	1	0	0	0	copy fasta	ZFP30	chr19	37626006	37660465
ZFP36L1_chr14_68782662_68798067	0/0	t0001	1998	102	8	31	42	1	20	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	1/0	t0002	2001	84	18	7	45	8	5	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0003	1998	84	3	12	63	2	4	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0004	1998	27	20	5	2	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0005	1999	19	3	1	11	1	3	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0006	2002	18	0	0	16	0	2	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0007	2000	15	1	13	0	0	1	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/1	t0008	1998	15	2	4	0	1	7	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0009	2002	10	6	4	0	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0010	1998	8	8	0	0	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0011	1997	5	0	0	5	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0012	2001	5	5	0	0	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0013	1998	3	0	0	1	0	2	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0014	1998	3	3	0	0	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0015	2001	2	0	0	2	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0016	1998	2	0	0	2	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0017	2001	2	2	0	0	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0018	2001	2	0	0	0	0	2	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0019	2001	2	0	1	0	0	1	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0020	2000	1	0	0	0	1	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0021	1998	1	0	0	1	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0022	1998	1	0	0	1	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0023	2000	1	0	0	1	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0024	2001	1	0	0	1	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0025	2028	1	0	0	1	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0026	1998	1	0	0	1	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0027	1997	1	0	0	1	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0028	2003	1	1	0	0	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0029	1998	1	0	0	1	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067