JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFP36L1_chr14_68782662_68798067	0/0	t0030	2001	1	0	0	1	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0031	2000	1	0	0	0	0	1	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0032	2001	1	0	0	0	1	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0033	1998	1	1	0	0	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0034	1998	1	0	0	0	1	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L1_chr14_68782662_68798067	0/0	t0035	1997	1	1	0	0	0	0	copy fasta	ZFP36L1	chr14	68782662	68798067
ZFP36L2_chr2_43217402_43231606	1/1	t0001	2209	252	26	46	145	9	24	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0002	2210	24	1	4	15	0	4	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0003	2207	22	20	2	0	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0004	2207	17	16	1	0	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0005	2207	14	8	4	0	1	1	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0006	2203	10	0	2	1	1	6	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0007	2209	9	8	1	0	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0008	2210	7	1	0	4	0	2	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0009	2209	7	0	0	7	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0010	2207	6	0	5	0	0	1	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0011	2208	5	5	0	0	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0012	2208	5	0	4	0	0	1	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0013	2207	5	5	0	0	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0014	2209	4	0	0	4	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0015	2207	3	0	0	0	0	3	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0016	2207	3	3	0	0	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0017	2209	3	0	0	3	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0018	2211	3	0	0	3	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0019	2208	2	0	2	0	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0020	2208	2	1	1	0	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0021	2204	2	0	0	0	0	2	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0022	2209	2	0	2	0	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0023	2194	2	2	0	0	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0024	2208	2	0	1	0	0	1	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0025	2207	1	0	0	0	0	1	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0026	2208	1	1	0	0	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0027	2209	1	0	1	0	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0028	2210	1	0	0	1	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0029	2210	1	0	1	0	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0030	2209	1	0	0	1	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0031	2209	1	0	0	1	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0032	2209	1	0	0	0	0	1	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0033	2209	1	0	0	1	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0034	2209	1	0	1	0	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0035	2209	1	1	0	0	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0036	2208	1	0	0	0	0	1	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0037	2207	1	0	0	0	0	1	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0038	2209	1	0	0	1	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0039	2209	1	0	0	0	0	1	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0040	2209	1	0	0	1	0	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36L2_chr2_43217402_43231606	0/0	t0041	2209	1	0	0	0	1	0	copy fasta	ZFP36L2	chr2	43217402	43231606
ZFP36_chr19_39401847_39414407	1/1	t0001	767	366	89	64	165	15	31	copy fasta	ZFP36	chr19	39401847	39414407
ZFP36_chr19_39401847_39414407	0/0	t0002	765	38	0	11	11	3	13	copy fasta	ZFP36	chr19	39401847	39414407
ZFP36_chr19_39401847_39414407	0/0	t0003	767	1	1	0	0	0	0	copy fasta	ZFP36	chr19	39401847	39414407