JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFP36_chr19_39401847_39414407	0/0	t0004	767	1	0	1	0	0	0	copy fasta	ZFP36	chr19	39401847	39414407
ZFP37_chr9_113033377_113061724	0/0	t0001	4388	90	1	5	74	1	9	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/1	t0002	4384	77	30	21	12	3	10	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	1/0	t0003	4385	70	14	25	8	9	13	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0004	4384	64	5	13	40	0	6	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0005	4384	43	8	6	26	0	3	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0006	4384	12	0	0	12	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0007	4385	11	1	1	9	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0008	4384	8	8	0	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0009	4384	5	0	0	5	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0010	4385	4	0	0	4	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0011	4388	4	0	0	4	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0012	4384	3	0	0	3	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0013	4384	3	0	2	1	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0014	4382	3	2	1	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0015	4384	3	0	0	3	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0016	4388	3	0	0	3	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0017	4385	3	3	0	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0018	4385	3	0	2	0	1	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0019	4385	3	0	0	3	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0020	4385	3	1	2	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0021	4385	3	3	0	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0022	4384	2	1	0	1	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0023	4386	2	2	0	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0024	4384	2	0	0	2	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0025	4387	1	0	0	1	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0026	4384	1	0	0	1	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0027	4388	1	0	0	1	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0028	4385	1	0	0	1	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0029	4384	1	0	0	1	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0030	4384	1	1	0	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0031	4384	1	0	1	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0032	4388	1	0	0	1	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0033	4388	1	0	0	1	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0034	4388	1	0	0	1	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0035	4388	1	0	0	1	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0036	4387	1	0	0	1	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0037	4388	1	0	0	1	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0038	4384	1	0	0	0	0	1	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0039	4384	1	0	1	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0040	4385	1	1	0	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0041	4384	1	0	0	1	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0042	4384	1	0	0	1	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0043	4384	1	0	1	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0044	4384	1	0	0	1	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0045	4384	1	0	0	0	0	1	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0046	4387	1	1	0	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0047	4386	1	1	0	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0048	4385	1	0	0	1	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0049	4384	1	0	1	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724