JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFP37_chr9_113033377_113061724	0/0	t0050	4384	1	0	0	0	0	1	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0051	4385	1	0	0	1	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0052	4385	1	0	1	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0053	4384	1	1	0	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP37_chr9_113033377_113061724	0/0	t0054	4385	1	0	1	0	0	0	copy fasta	ZFP37	chr9	113033377	113061724
ZFP3_chr17_5073467_5101374	0/0	t0001	3476	103	5	14	65	4	15	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0002	3476	75	5	21	34	5	10	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0003	3477	59	18	3	35	1	2	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0004	3476	34	2	6	23	1	2	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0005	3476	21	4	0	16	0	1	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0006	3476	17	16	1	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0007	3476	14	2	7	0	1	4	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0008	3477	14	5	5	4	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0009	3475	9	4	0	5	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0010	3476	6	2	2	0	0	2	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0011	3475	5	4	1	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0012	3476	4	3	1	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0013	3476	4	4	0	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/1	t0014	3476	3	0	0	0	2	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0015	3476	2	0	0	2	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0016	3476	2	2	0	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0017	3476	2	0	0	2	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0018	3478	2	2	0	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0019	3477	2	2	0	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0020	3477	2	2	0	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0021	3477	2	2	0	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0022	3476	1	0	0	1	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0023	3476	1	1	0	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0024	3476	1	0	1	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0025	3476	1	0	0	1	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0026	3476	1	0	0	0	0	1	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0027	3476	1	0	0	1	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0028	3446	1	0	0	1	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0029	3476	1	1	0	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0030	3476	1	1	0	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0031	3476	1	1	0	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0032	3476	1	0	0	1	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0033	3476	1	0	1	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0034	3476	1	0	0	1	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0035	3476	1	1	0	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0036	3476	1	0	0	1	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0037	3476	1	1	0	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0038	3478	1	1	0	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0039	3477	1	1	0	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0040	3477	1	1	0	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0041	3477	1	0	1	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	1/0	t0042	3479	1	0	0	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0043	3478	1	0	0	1	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0044	3478	1	1	0	0	0	0	copy fasta	ZFP3	chr17	5073467	5101374
ZFP3_chr17_5073467_5101374	0/0	t0045	3478	1	0	0	0	0	1	copy fasta	ZFP3	chr17	5073467	5101374