JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFP41_chr8_143241939_143267705	0/0	t0001	4239	63	4	15	28	4	12	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/1	t0002	4214	43	1	16	16	3	6	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0003	4239	38	10	5	12	5	6	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0004	4091	25	0	7	14	2	2	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	1/0	t0005	4190	24	2	6	11	1	3	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0006	4339	16	14	2	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0007	4141	11	11	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0008	4239	7	7	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0009	4239	6	6	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0010	4165	5	5	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0011	4239	5	5	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0012	4239	4	4	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0013	4214	3	0	0	0	0	3	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0014	4141	3	3	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0015	4214	3	1	1	0	0	1	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0016	4140	2	0	2	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0017	4214	2	0	0	2	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0018	4264	2	0	0	2	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0019	4214	2	0	1	0	0	1	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0020	4214	2	0	1	0	1	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0021	4141	2	2	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0022	4116	2	2	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0023	4239	2	0	0	0	0	2	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0024	4239	2	1	1	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0025	4091	2	2	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0026	4091	2	0	0	2	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0027	4141	2	2	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0028	4214	1	0	0	1	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0029	4214	1	0	1	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0030	4214	1	0	0	1	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0031	4214	1	0	0	1	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0032	4214	1	0	0	0	0	1	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0033	4239	1	0	1	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0034	4239	1	0	0	0	0	1	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0035	4232	1	0	0	1	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0036	4239	1	0	0	0	0	1	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0037	4239	1	0	0	0	0	1	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0038	4190	1	0	0	0	0	1	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0039	4214	1	0	0	1	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0040	4239	1	0	0	1	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0041	4239	1	1	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0042	4264	1	0	1	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0043	4339	1	1	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0044	4190	1	0	0	0	0	1	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0045	4214	1	0	0	0	0	1	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0046	4239	1	1	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0047	4214	1	1	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0048	4190	1	0	1	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0049	4165	1	0	0	0	0	1	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0050	4165	1	1	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705