JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFP41_chr8_143241939_143267705	0/0	t0051	4264	1	0	1	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0052	4091	1	0	0	1	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0053	4339	1	1	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0054	4141	1	1	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0055	4190	1	1	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0056	4339	1	1	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0057	4141	1	1	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0058	4265	1	1	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0059	4140	1	1	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0060	4165	1	1	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0061	4190	1	1	0	0	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0062	4165	1	0	0	1	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP41_chr8_143241939_143267705	0/0	t0063	4190	1	0	0	1	0	0	copy fasta	ZFP41	chr8	143241939	143267705
ZFP42_chr4_187990771_188010046	0/0	t0001	1718	185	24	24	124	0	13	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	t0002	1697	75	17	1	39	1	17	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	t0003	1715	57	4	17	23	3	10	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	t0004	1715	43	28	14	0	0	1	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	1/0	t0005	1715	25	4	12	0	6	2	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	t0006	1715	10	5	3	0	2	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	t0007	1718	8	0	0	8	0	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	t0008	1718	6	0	2	3	1	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	t0009	1719	6	1	0	1	0	4	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	t0010	1715	5	0	4	0	1	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/1	t0011	1715	4	0	1	1	1	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	t0012	1718	3	0	0	3	0	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	t0013	1715	3	3	0	0	0	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	t0014	1715	3	3	0	0	0	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	t0015	1715	2	2	0	0	0	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	t0016	1718	2	0	0	2	0	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	t0017	1718	2	0	0	2	0	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	t0018	1715	1	1	0	0	0	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	t0019	1715	1	1	0	0	0	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	t0020	1715	1	0	0	0	0	1	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	t0021	1715	1	0	1	0	0	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	t0022	1719	1	0	0	0	0	1	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	t0023	1716	1	0	0	0	1	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	t0024	1698	1	0	0	0	0	1	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	t0025	1697	1	1	0	0	0	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP42_chr4_187990771_188010046	0/0	t0026	1718	1	0	1	0	0	0	copy fasta	ZFP42	chr4	187990771	188010046
ZFP57_chr6_29667483_29686152	0/0	t0001	472	185	34	35	102	4	10	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/1	t0002	472	118	16	23	61	3	14	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	t0003	472	101	35	26	20	5	15	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	t0004	472	26	0	3	17	0	6	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	t0005	472	2	1	1	0	0	0	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	t0006	472	1	0	0	1	0	0	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	t0007	472	1	0	0	1	0	0	copy fasta	ZFP57	chr6	29667483	29686152
ZFP57_chr6_29667483_29686152	0/0	t0008	472	1	0	0	0	0	1	copy fasta	ZFP57	chr6	29667483	29686152
ZFP62_chr5_180842611_180866276	0/0	t0001	1239	293	34	60	151	10	38	copy fasta	ZFP62	chr5	180842611	180866276
ZFP62_chr5_180842611_180866276	1/1	t0002	1239	38	26	8	0	0	2	copy fasta	ZFP62	chr5	180842611	180866276
ZFP62_chr5_180842611_180866276	0/0	t0003	1239	23	21	2	0	0	0	copy fasta	ZFP62	chr5	180842611	180866276