JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFP62_chr5_180842611_180866276	0/0	t0004	1239	14	0	0	12	0	2	copy fasta	ZFP62	chr5	180842611	180866276
ZFP62_chr5_180842611_180866276	0/0	t0005	1239	12	11	1	0	0	0	copy fasta	ZFP62	chr5	180842611	180866276
ZFP62_chr5_180842611_180866276	0/0	t0006	1239	11	0	0	11	0	0	copy fasta	ZFP62	chr5	180842611	180866276
ZFP62_chr5_180842611_180866276	0/0	t0007	1239	3	0	2	0	1	0	copy fasta	ZFP62	chr5	180842611	180866276
ZFP62_chr5_180842611_180866276	0/0	t0008	1239	3	0	2	0	1	0	copy fasta	ZFP62	chr5	180842611	180866276
ZFP62_chr5_180842611_180866276	0/0	t0009	1239	1	1	0	0	0	0	copy fasta	ZFP62	chr5	180842611	180866276
ZFP62_chr5_180842611_180866276	0/0	t0010	1239	1	1	0	0	0	0	copy fasta	ZFP62	chr5	180842611	180866276
ZFP62_chr5_180842611_180866276	0/0	t0011	1239	1	0	1	0	0	0	copy fasta	ZFP62	chr5	180842611	180866276
ZFP64_chr20_52146278_52196779	1/1	t0001	1012	229	54	45	89	10	29	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	t0002	1011	66	6	15	33	2	10	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	t0003	1011	35	17	9	2	6	1	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	t0004	1012	21	0	0	21	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	t0005	1011	6	6	0	0	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	t0006	1011	2	2	0	0	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	t0007	1012	1	0	0	1	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	t0008	1012	1	0	0	1	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	t0009	1012	1	0	0	1	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	t0010	1011	1	0	1	0	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP64_chr20_52146278_52196779	0/0	t0011	1012	1	1	0	0	0	0	copy fasta	ZFP64	chr20	52146278	52196779
ZFP69B_chr1_40445476_40468715	0/0	t0001	613	234	50	45	109	5	25	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69B_chr1_40445476_40468715	1/1	t0002	613	185	43	31	82	11	16	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69B_chr1_40445476_40468715	0/0	t0003	613	40	0	2	35	0	3	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69B_chr1_40445476_40468715	0/0	t0004	612	7	7	0	0	0	0	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69B_chr1_40445476_40468715	0/0	t0005	613	1	0	0	1	0	0	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69B_chr1_40445476_40468715	0/0	t0006	613	1	0	0	1	0	0	copy fasta	ZFP69B	chr1	40445476	40468715
ZFP69_chr1_40472290_40501343	0/0	t0001	1216	342	58	56	175	15	38	copy fasta	ZFP69	chr1	40472290	40501343
ZFP69_chr1_40472290_40501343	0/0	t0002	1216	21	0	1	19	0	1	copy fasta	ZFP69	chr1	40472290	40501343
ZFP69_chr1_40472290_40501343	0/0	t0003	1216	11	6	3	0	2	0	copy fasta	ZFP69	chr1	40472290	40501343
ZFP69_chr1_40472290_40501343	0/0	t0004	1216	10	10	0	0	0	0	copy fasta	ZFP69	chr1	40472290	40501343
ZFP69_chr1_40472290_40501343	0/0	t0005	1216	5	4	1	0	0	0	copy fasta	ZFP69	chr1	40472290	40501343
ZFP69_chr1_40472290_40501343	0/1	t0006	1216	4	0	1	0	1	1	copy fasta	ZFP69	chr1	40472290	40501343
ZFP69_chr1_40472290_40501343	0/0	t0007	1216	3	3	0	0	0	0	copy fasta	ZFP69	chr1	40472290	40501343
ZFP69_chr1_40472290_40501343	0/0	t0008	1216	3	0	0	3	0	0	copy fasta	ZFP69	chr1	40472290	40501343
ZFP69_chr1_40472290_40501343	1/0	t0009	1216	1	0	0	0	0	0	copy fasta	ZFP69	chr1	40472290	40501343
ZFP69_chr1_40472290_40501343	0/0	t0010	1216	1	1	0	0	0	0	copy fasta	ZFP69	chr1	40472290	40501343
ZFP69_chr1_40472290_40501343	0/0	t0011	1216	1	0	0	1	0	0	copy fasta	ZFP69	chr1	40472290	40501343
ZFP69_chr1_40472290_40501343	0/0	t0012	1216	1	1	0	0	0	0	copy fasta	ZFP69	chr1	40472290	40501343
ZFP69_chr1_40472290_40501343	0/0	t0013	1216	1	1	0	0	0	0	copy fasta	ZFP69	chr1	40472290	40501343
ZFP82_chr19_36383630_36423644	1/0	t0001	4343	110	23	19	48	4	15	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/1	t0002	4339	67	2	12	42	2	8	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0003	4316	37	0	3	28	3	3	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0004	4344	37	8	0	28	0	1	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0005	4338	17	0	6	2	1	8	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0006	4342	16	16	0	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0007	4343	12	12	0	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0008	4341	8	8	0	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0009	4343	8	8	0	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0010	4316	7	1	6	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0011	4344	5	1	3	1	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0012	4340	5	0	1	4	0	0	copy fasta	ZFP82	chr19	36383630	36423644