JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFP82_chr19_36383630_36423644	0/0	t0013	4342	4	0	0	4	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0014	4340	4	0	3	0	0	1	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0015	4317	3	0	2	1	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0016	4344	3	2	1	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0017	4339	3	0	0	3	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0018	4337	3	1	1	0	1	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0019	4316	2	0	1	0	1	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0020	4316	2	0	2	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0021	4317	2	0	2	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0022	4344	2	1	1	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0023	4343	2	1	0	1	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0024	4340	2	0	1	0	0	1	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0025	4340	2	2	0	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0026	4343	1	0	0	1	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0027	4345	1	0	0	1	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0028	4344	1	0	0	1	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0029	4344	1	0	0	1	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0030	4343	1	0	0	1	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0031	4343	1	1	0	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0032	4344	1	1	0	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0033	4317	1	0	0	1	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0034	4315	1	0	0	1	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0035	4315	1	0	1	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0036	4342	1	1	0	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0037	4342	1	1	0	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0038	4343	1	1	0	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0039	4341	1	0	1	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0040	4342	1	0	1	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0041	4339	1	0	1	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0042	4339	1	1	0	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0043	4339	1	0	0	1	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0044	4339	1	0	0	0	0	1	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0045	4343	1	1	0	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP82_chr19_36383630_36423644	0/0	t0046	4342	1	1	0	0	0	0	copy fasta	ZFP82	chr19	36383630	36423644
ZFP90_chr16_68534291_68572131	0/1	t0001	2664	162	32	29	79	7	14	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	1/0	t0002	2658	63	6	13	32	0	11	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0003	2664	38	0	10	23	0	5	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0004	2664	24	6	10	0	3	5	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0005	2663	15	14	1	0	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0006	2656	13	13	0	0	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0007	2664	6	0	0	6	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0008	2665	5	0	4	0	0	1	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0009	2663	5	0	0	4	0	1	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0010	2663	3	2	0	1	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0011	2664	3	3	0	0	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0012	2663	2	0	0	0	0	2	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0013	2658	2	2	0	0	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0014	2658	2	0	0	0	2	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0015	2661	1	0	0	1	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0016	2663	1	0	0	1	0	0	copy fasta	ZFP90	chr16	68534291	68572131