Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACTR10_chr14_58195149_58240636	0/0	t0027	1154	1	1	0	0	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0028	1155	1	1	0	0	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR1A_chr10_102474229_102507712	0/0	t0001	1700	146	44	32	46	5	19	copy fasta	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	t0002	1700	117	12	14	78	3	10	copy fasta	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	t0003	1700	96	13	22	48	2	11	copy fasta	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	t0004	1700	17	15	2	0	0	0	copy fasta	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	t0005	1700	3	3	0	0	0	0	copy fasta	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	t0006	1700	1	0	0	1	0	0	copy fasta	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/1	t0007	1700	1	0	0	0	0	0	copy fasta	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	t0008	1700	1	1	0	0	0	0	copy fasta	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	1/0	t0009	1700	1	0	0	0	0	0	copy fasta	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	t0010	1700	1	0	0	1	0	0	copy fasta	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	t0011	1700	1	1	0	0	0	0	copy fasta	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	t0012	1700	1	0	1	0	0	0	copy fasta	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	t0013	1700	1	1	0	0	0	0	copy fasta	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	t0014	1700	1	0	1	0	0	0	copy fasta	ACTR1A	chr10	102474229	102507712
ACTR1B_chr2_97650939_97669044	1/1	t0001	1074	164	21	27	84	2	28	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	t0002	1074	115	9	36	47	15	8	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	t0003	1074	38	27	8	1	1	1	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	t0004	1074	29	0	0	26	0	3	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	t0005	1074	28	25	3	0	0	0	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	t0006	1074	7	7	0	0	0	0	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	t0007	1074	7	0	0	7	0	0	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	t0008	1074	3	3	0	0	0	0	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	t0009	1074	2	1	0	1	0	0	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	t0010	1074	2	2	0	0	0	0	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	t0011	1074	1	1	0	0	0	0	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	t0012	1074	1	1	0	0	0	0	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	t0013	1074	1	1	0	0	0	0	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR2_chr2_65222831_65276253	0/0	t0001	2597	99	10	20	51	2	16	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0002	2599	56	40	8	0	2	6	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/1	t0003	2599	42	11	10	14	3	3	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0004	2599	41	2	13	24	0	2	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0005	2599	17	1	4	0	5	7	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0006	2599	11	0	5	1	4	1	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0007	2597	9	0	0	9	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0008	2599	6	0	1	4	0	1	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0009	2597	6	6	0	0	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0010	2600	5	5	0	0	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0011	2597	5	5	0	0	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0012	2599	4	4	0	0	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0013	2599	2	2	0	0	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0014	2599	2	2	0	0	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0015	2597	2	2	0	0	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0016	2597	2	2	0	0	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	1/0	t0017	2599	2	0	1	0	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0018	2597	1	0	0	1	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0019	2600	1	1	0	0	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0020	2599	1	1	0	0	0	0	copy fasta	ACTR2	chr2	65222831	65276253
ACTR2_chr2_65222831_65276253	0/0	t0021	2599	1	1	0	0	0	0	copy fasta	ACTR2	chr2	65222831	65276253