JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C1orf159_chr1_1076823_1121089	0/0	t0007	1236	10	10	0	0	0	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	t0008	1236	7	6	1	0	0	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	t0009	1236	4	4	0	0	0	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	t0010	1236	2	2	0	0	0	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	t0011	1236	2	0	0	0	1	1	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	t0012	1236	1	0	0	1	0	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	t0013	1236	1	0	1	0	0	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	t0014	1236	1	1	0	0	0	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	t0015	1236	1	0	0	0	1	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	t0016	1236	1	0	1	0	0	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	t0017	1236	1	0	0	1	0	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	t0018	1236	1	0	0	1	0	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	t0019	1236	1	1	0	0	0	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	t0020	1236	1	0	1	0	0	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	t0021	1236	1	0	0	0	0	1	copy fasta	C1orf159	chr1	1076823	1121089
C1orf162_chr1_111468984_111483512	1/1	t0001	448	301	38	50	165	12	34	copy fasta	C1orf162	chr1	111468984	111483512
C1orf162_chr1_111468984_111483512	0/0	t0002	448	166	57	23	67	4	15	copy fasta	C1orf162	chr1	111468984	111483512
C1orf162_chr1_111468984_111483512	0/0	t0003	448	2	0	2	0	0	0	copy fasta	C1orf162	chr1	111468984	111483512
C1orf162_chr1_111468984_111483512	0/0	t0004	448	2	1	1	0	0	0	copy fasta	C1orf162	chr1	111468984	111483512
C1orf162_chr1_111468984_111483512	0/0	t0005	448	1	0	0	1	0	0	copy fasta	C1orf162	chr1	111468984	111483512
C1orf162_chr1_111468984_111483512	0/0	t0006	448	1	0	0	0	0	1	copy fasta	C1orf162	chr1	111468984	111483512
C1orf162_chr1_111468984_111483512	0/0	t0007	448	1	1	0	0	0	0	copy fasta	C1orf162	chr1	111468984	111483512
C1orf162_chr1_111468984_111483512	0/0	t0008	448	1	1	0	0	0	0	copy fasta	C1orf162	chr1	111468984	111483512
C1orf162_chr1_111468984_111483512	0/0	t0009	448	1	0	0	1	0	0	copy fasta	C1orf162	chr1	111468984	111483512
C1orf167_chr1_11757193_11794585	1/1	t0001	323	340	87	67	128	14	42	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	t0002	323	6	5	1	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	t0003	323	2	2	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	t0004	323	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	t0005	323	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf174_chr1_3884133_3905272	1/1	t0001	914	129	14	25	68	3	17	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	t0002	914	109	13	27	56	8	5	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	t0003	912	85	13	5	59	1	7	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	t0004	913	52	15	10	13	5	9	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	t0005	913	31	25	4	0	0	2	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	t0006	915	10	8	0	2	0	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	t0007	915	4	0	0	4	0	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	t0008	913	3	0	0	3	0	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	t0009	914	3	3	0	0	0	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	t0010	914	2	0	0	2	0	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	t0011	898	2	1	0	0	1	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	t0012	914	1	0	0	0	0	1	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	t0013	912	1	1	0	0	0	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	t0014	914	1	0	0	0	0	1	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	t0015	913	1	0	0	1	0	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	t0016	913	1	1	0	0	0	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	t0017	914	1	0	1	0	0	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	t0018	914	1	0	0	0	0	1	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	t0019	914	1	1	0	0	0	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	t0020	899	1	0	0	0	0	1	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	t0021	914	1	1	0	0	0	0	copy fasta	C1orf174	chr1	3884133	3905272