JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFP90_chr16_68534291_68572131	0/0	t0017	2664	1	0	0	1	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0018	2664	1	0	0	1	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0019	2665	1	1	0	0	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0020	2664	1	1	0	0	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0021	2661	1	0	0	1	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0022	2664	1	0	0	1	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0023	2664	1	1	0	0	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0024	2664	1	0	0	1	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0025	2664	1	0	1	0	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0026	2663	1	0	0	1	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0027	2664	1	1	0	0	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0028	2664	1	1	0	0	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0029	2664	1	0	0	1	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0030	2664	1	0	1	0	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0031	2658	1	1	0	0	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0032	2656	1	1	0	0	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0033	2656	1	1	0	0	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0034	2658	1	0	0	1	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0035	2657	1	0	0	1	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0036	2658	1	0	0	0	0	1	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0037	2664	1	0	1	0	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0038	2658	1	1	0	0	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP90_chr16_68534291_68572131	0/0	t0039	2658	1	1	0	0	0	0	copy fasta	ZFP90	chr16	68534291	68572131
ZFP91_chr11_58574063_58626550	1/0	t0001	4064	133	26	22	64	7	13	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0002	4067	49	9	14	18	3	5	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0003	4063	38	3	9	21	1	4	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0004	4067	25	0	2	23	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0005	4065	10	9	1	0	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0006	4064	9	9	0	0	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0007	4063	7	7	0	0	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0008	4065	6	1	2	3	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0009	4068	6	1	3	1	0	1	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0010	4066	5	4	1	0	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0011	4065	4	1	2	1	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0012	4064	4	0	1	2	0	1	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0013	4064	3	3	0	0	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0014	4065	3	1	0	2	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/1	t0015	4067	3	0	0	0	1	1	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0016	4063	2	2	0	0	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0017	4064	2	2	0	0	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0018	4068	2	0	0	2	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0019	4063	1	0	1	0	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0020	4063	1	0	0	0	1	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0021	4064	1	0	0	1	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0022	4064	1	0	0	1	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0023	4064	1	1	0	0	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0024	4065	1	1	0	0	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0025	4064	1	0	0	0	0	1	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0026	4064	1	0	1	0	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0027	4064	1	1	0	0	0	0	copy fasta	ZFP91	chr11	58574063	58626550