JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFP91_chr11_58574063_58626550	0/0	t0028	4064	1	0	0	0	0	1	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0029	4064	1	1	0	0	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0030	4065	1	0	1	0	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0031	4065	1	0	0	1	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0032	4064	1	0	0	1	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0033	4063	1	1	0	0	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0034	4063	1	1	0	0	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0035	4064	1	0	0	0	1	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0036	4064	1	0	1	0	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0037	4064	1	0	0	1	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0038	4066	1	0	0	1	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0039	4066	1	1	0	0	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0040	4066	1	0	0	0	0	1	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0041	4067	1	0	0	1	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0042	4067	1	0	1	0	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP91_chr11_58574063_58626550	0/0	t0043	4067	1	1	0	0	0	0	copy fasta	ZFP91	chr11	58574063	58626550
ZFP92_chrX_153406472_153431481	0/0	t0001	5155	59	0	10	42	1	6	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	1/0	t0002	5153	47	5	11	20	3	7	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0003	5151	18	4	4	9	0	1	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0004	5155	13	0	1	11	1	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/1	t0005	5149	13	0	7	0	2	3	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0006	5149	9	0	7	0	1	1	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0007	5157	8	1	1	4	0	2	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0008	5151	6	0	0	6	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0009	5159	6	6	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0010	5151	6	0	0	5	0	1	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0011	5151	6	2	1	1	2	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0012	5153	5	0	0	5	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0013	5159	5	0	0	4	0	1	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0014	5153	4	0	0	4	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0015	5157	4	4	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0016	5157	3	0	1	2	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0017	5153	3	0	2	1	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0018	5155	3	0	0	3	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0019	5155	3	0	2	0	0	1	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0020	5153	3	0	1	1	0	1	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0021	5153	3	2	0	1	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0022	5152	3	2	1	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0023	5157	3	3	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0024	5149	2	1	1	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0025	5153	2	0	0	2	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0026	5154	2	0	1	0	0	1	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0027	5151	2	0	2	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0028	5159	2	2	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0029	5159	2	2	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0030	5155	2	2	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0031	5153	2	2	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0032	5149	2	0	0	1	0	1	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0033	5154	2	2	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0034	5152	2	1	1	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481