JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFP92_chrX_153406472_153431481	0/0	t0085	5143	1	1	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0086	5143	1	1	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0087	5143	1	1	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0088	5155	1	0	0	1	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0089	5155	1	1	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0090	5153	1	0	0	1	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0091	5154	1	1	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0092	5152	1	1	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0093	5157	1	1	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0094	5157	1	1	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0095	5155	1	1	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0096	5152	1	1	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0097	5155	1	1	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0098	5173	1	0	0	1	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0099	5154	1	0	0	1	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0100	5155	1	0	1	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0101	5157	1	1	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0102	5157	1	1	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0103	5152	1	1	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0104	5156	1	0	0	1	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0105	5161	1	0	0	1	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFP92_chrX_153406472_153431481	0/0	t0106	5155	1	1	0	0	0	0	copy fasta	ZFP92	chrX	153406472	153431481
ZFPL1_chr11_65079222_65093398	1/1	t0001	450	375	97	76	142	18	40	copy fasta	ZFPL1	chr11	65079222	65093398
ZFPL1_chr11_65079222_65093398	0/0	t0002	450	1	1	0	0	0	0	copy fasta	ZFPL1	chr11	65079222	65093398
ZFPM1_chr16_88448280_88542031	0/0	t0001	2412	43	9	12	9	8	5	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	t0002	2411	31	11	8	9	0	3	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	t0003	2412	27	5	7	14	0	1	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	t0004	2412	26	4	7	11	2	2	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	t0005	2411	25	4	5	13	0	3	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/1	t0006	2412	22	0	3	15	0	3	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	t0007	2412	12	1	1	6	0	4	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	t0008	2412	8	0	0	8	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	t0009	2411	8	8	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	t0010	2412	7	7	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	t0011	2412	6	1	0	1	0	4	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	t0012	2412	5	1	3	0	1	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	t0013	2412	5	0	0	4	0	1	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	t0014	2411	5	0	5	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	t0015	2412	4	2	2	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	t0016	2412	4	0	3	0	0	1	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	t0017	2411	4	0	0	0	0	4	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	t0018	2411	3	1	2	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	t0019	2412	3	0	0	0	0	3	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	t0020	2412	3	1	1	0	1	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	t0021	2411	3	1	0	2	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	t0022	2411	3	0	0	2	0	1	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	t0023	2412	3	0	0	3	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	t0024	2412	3	3	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	t0025	2412	2	2	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031
ZFPM1_chr16_88448280_88542031	0/0	t0026	2412	2	2	0	0	0	0	copy fasta	ZFPM1	chr16	88448280	88542031