JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFPM2_chr8_105313438_105809539	0/0	t0004	1519	6	6	0	0	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	1/0	t0005	1506	3	0	0	2	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	t0006	1528	2	2	0	0	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	t0007	1515	1	0	1	0	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	t0008	1510	1	0	1	0	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	t0009	1518	1	1	0	0	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	t0010	1519	1	1	0	0	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	t0011	1528	1	1	0	0	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	t0012	1528	1	1	0	0	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	t0013	1510	1	1	0	0	0	0	copy fasta	ZFPM2	chr8	105313438	105809539
ZFPM2_chr8_105313438_105809539	0/0	t0014	1510	1	0	0	0	0	1	copy fasta	ZFPM2	chr8	105313438	105809539
ZFR2_chr19_3799024_3874038	1/0	t0001	1947	166	19	41	73	6	26	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0002	1947	96	9	17	57	4	9	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0003	1947	61	5	20	33	0	3	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0004	1935	24	23	1	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0005	1947	6	0	0	6	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0006	1947	5	5	0	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0007	1935	5	5	0	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/1	t0008	1947	4	2	0	0	1	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0009	1947	3	3	0	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0010	1947	3	0	3	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0011	1947	2	2	0	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0012	1947	2	0	0	0	0	2	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0013	1947	2	2	0	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0014	1947	2	2	0	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0015	1947	2	0	0	0	0	2	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0016	1935	1	1	0	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0017	1947	1	1	0	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0018	1935	1	1	0	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0019	1947	1	0	0	0	0	1	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0020	1947	1	0	0	0	1	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0021	1947	1	0	0	1	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0022	1947	1	0	0	1	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0023	1947	1	0	0	0	0	1	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0024	1947	1	1	0	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0025	1947	1	0	0	1	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0026	1947	1	0	0	1	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0027	1947	1	1	0	0	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0028	1947	1	0	0	1	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0029	1947	1	0	0	1	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR2_chr19_3799024_3874038	0/0	t0030	1947	1	0	0	1	0	0	copy fasta	ZFR2	chr19	3799024	3874038
ZFR_chr5_32349350_32449740	1/1	t0001	1493	373	85	62	176	12	36	copy fasta	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	t0002	1493	3	1	2	0	0	0	copy fasta	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	t0003	1493	1	1	0	0	0	0	copy fasta	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	t0004	1493	1	0	0	0	0	1	copy fasta	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	t0005	1493	1	1	0	0	0	0	copy fasta	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	t0006	1493	1	0	0	0	0	1	copy fasta	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	t0007	1493	1	0	0	1	0	0	copy fasta	ZFR	chr5	32349350	32449740
ZFR_chr5_32349350_32449740	0/0	t0008	1493	1	0	0	1	0	0	copy fasta	ZFR	chr5	32349350	32449740
ZFTA_chr11_63754892_63773775	1/1	t0001	3680	162	40	35	51	10	24	copy fasta	ZFTA	chr11	63754892	63773775