JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFTA_chr11_63754892_63773775	0/0	t0002	3680	11	0	3	2	2	4	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0003	3686	8	1	2	0	1	4	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0004	3680	8	7	1	0	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0005	3680	6	0	0	6	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0006	3680	5	4	1	0	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0007	3686	5	4	1	0	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0008	3680	4	1	0	0	2	1	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0009	3678	4	0	0	4	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0010	3680	4	2	0	0	0	2	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0011	3686	3	3	0	0	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0012	3686	3	3	0	0	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0013	3680	3	0	0	3	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0014	3680	3	3	0	0	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0015	3680	3	3	0	0	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0016	3680	2	0	0	2	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0017	3686	2	2	0	0	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0018	3686	1	1	0	0	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0019	3686	1	1	0	0	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0020	3686	1	0	0	0	0	1	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0021	3680	1	1	0	0	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0022	3680	1	0	0	1	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0023	3680	1	0	0	1	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0024	3680	1	1	0	0	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0025	3680	1	0	0	1	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0026	3680	1	0	1	0	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0027	3680	1	0	0	0	1	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0028	3680	1	0	0	1	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0029	3680	1	0	0	0	0	1	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0030	3680	1	1	0	0	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0031	3680	1	0	0	1	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0032	3680	1	0	1	0	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0033	3680	1	1	0	0	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0034	3680	1	0	0	1	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0035	3680	1	0	1	0	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0036	3686	1	1	0	0	0	0	copy fasta	ZFTA	chr11	63754892	63773775
ZFTA_chr11_63754892_63773775	0/0	t0037	3686	1	0	0	0	0	1	copy fasta	ZFTA	chr11	63754892	63773775
ZFTRAF1_chr8_144444582_144467871	0/1	t0001	1015	339	65	71	146	15	41	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	1/0	t0002	1015	58	3	5	49	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	t0003	1015	14	14	0	0	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	t0004	1015	8	6	0	0	0	2	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	t0005	1015	4	4	0	0	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	t0006	1015	2	0	0	2	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	t0007	1015	2	0	2	0	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	t0008	1015	1	1	0	0	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	t0009	1015	1	1	0	0	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	t0010	1015	1	1	0	0	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	t0011	1015	1	0	0	1	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	t0012	1015	1	1	0	0	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	t0013	1015	1	0	0	1	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	t0014	1015	1	0	0	1	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871