JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFTRAF1_chr8_144444582_144467871	0/0	t0015	1015	1	0	0	1	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	t0016	1015	1	0	1	0	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	t0017	1015	1	0	0	0	0	1	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	t0018	1015	1	1	0	0	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	t0019	1015	1	0	1	0	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	t0020	987	1	0	0	1	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	t0021	1015	1	0	0	1	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	t0022	1015	1	1	0	0	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	t0023	1015	1	0	0	1	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	t0024	1015	1	0	0	0	1	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	t0025	1015	1	0	0	1	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFTRAF1_chr8_144444582_144467871	0/0	t0026	1015	1	0	0	1	0	0	copy fasta	ZFTRAF1	chr8	144444582	144467871
ZFX_chrX_24144729_24221255	0/0	t0001	5195	69	2	19	39	7	2	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0002	5195	43	0	1	35	0	7	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/1	t0003	5199	22	3	8	0	3	7	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0004	5197	20	1	5	10	0	4	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0005	5195	12	1	2	4	3	2	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0006	5199	12	5	2	4	0	1	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0007	5194	10	8	1	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0008	5197	8	7	1	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0009	5198	7	6	1	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	1/0	t0010	5195	6	0	5	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0011	5196	6	0	0	6	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0012	5194	5	5	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0013	5193	4	3	1	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0014	5194	4	4	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0015	5205	4	3	1	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0016	5193	3	2	1	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0017	5195	3	0	0	3	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0018	5195	3	0	0	0	0	3	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0019	5187	2	2	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0020	5194	2	0	0	2	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0021	5197	2	0	0	2	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0022	5196	2	0	0	1	0	1	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0023	5199	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0024	5198	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0025	5191	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0026	5201	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0027	5194	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0028	5192	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0029	5194	1	0	1	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0030	5195	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0031	5196	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0032	5195	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0033	5199	1	0	0	0	0	1	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0034	5197	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0035	5193	1	0	1	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0036	5193	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0037	5194	1	0	1	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0038	5198	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255