JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFX_chrX_24144729_24221255	0/0	t0039	5195	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0040	5199	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0041	5195	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0042	5201	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0043	5195	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0044	5199	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0045	5195	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0046	5194	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0047	5193	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0048	5195	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0049	5199	1	0	1	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0050	5196	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0051	5196	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0052	5192	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0053	5195	1	0	0	0	0	1	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0054	5196	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0055	5196	1	0	1	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0056	5194	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0057	5195	1	0	0	0	0	1	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0058	5197	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0059	5200	1	0	1	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0060	5196	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0061	5195	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0062	5194	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0063	5197	1	0	1	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0064	5196	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0065	5196	1	0	0	0	0	1	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0066	5193	1	0	0	0	0	1	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0067	5198	1	1	0	0	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFX_chrX_24144729_24221255	0/0	t0068	5191	1	0	0	1	0	0	copy fasta	ZFX	chrX	24144729	24221255
ZFYVE16_chr5_80403064_80488379	0/1	t0001	6187	130	31	28	35	9	26	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	1/0	t0002	6186	43	25	5	6	2	4	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0003	6187	7	7	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0004	6186	6	0	1	0	2	3	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0005	6187	4	0	0	4	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0006	6187	3	0	1	0	2	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0007	6184	3	3	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0008	6186	2	1	0	0	1	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0009	6186	2	1	1	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0010	6186	1	1	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0011	6186	1	1	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0012	6186	1	1	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0013	6186	1	1	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0014	6186	1	1	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0015	6186	1	1	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0016	6186	1	0	0	0	0	1	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0017	6186	1	1	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0018	6547	1	1	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0019	6532	1	1	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0020	6530	1	1	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379