JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFYVE16_chr5_80403064_80488379	0/0	t0021	6186	1	1	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0022	6186	1	1	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0023	6186	1	1	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0024	6186	1	0	1	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0025	6187	1	0	0	1	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0026	6187	1	0	0	1	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0027	6187	1	1	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0028	6187	1	0	1	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0029	6187	1	0	0	0	0	1	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0030	6187	1	0	0	1	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0031	6187	1	0	0	0	0	1	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0032	6187	1	0	0	1	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0033	6187	1	0	0	1	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0034	6186	1	1	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE16_chr5_80403064_80488379	0/0	t0035	6186	1	1	0	0	0	0	copy fasta	ZFYVE16	chr5	80403064	80488379
ZFYVE19_chr15_40802089_40820084	0/0	t0001	1360	139	5	17	95	8	14	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	1/0	t0002	1360	117	60	24	21	6	5	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	t0003	1360	89	4	21	51	1	12	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	t0004	1360	13	10	1	2	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	t0005	1360	9	8	1	0	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	t0006	1360	3	0	0	2	0	1	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	t0007	1360	3	3	0	0	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	t0008	1360	2	0	0	0	0	2	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	t0009	1360	1	0	1	0	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	t0010	1360	1	0	1	0	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	t0011	1360	1	0	0	1	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/1	t0012	1360	1	0	0	0	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	t0013	1360	1	0	1	0	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	t0014	1360	1	0	1	0	0	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE19_chr15_40802089_40820084	0/0	t0015	1360	1	0	0	0	1	0	copy fasta	ZFYVE19	chr15	40802089	40820084
ZFYVE1_chr14_72964451_73032106	1/0	t0001	2047	209	45	35	108	3	17	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	t0002	2047	50	3	9	34	1	3	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/1	t0003	2047	49	1	10	22	6	9	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	t0004	2042	20	2	7	5	1	5	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	t0005	2047	15	15	0	0	0	0	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	t0006	2049	7	6	1	0	0	0	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	t0007	2042	5	0	5	0	0	0	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	t0008	2049	4	4	0	0	0	0	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	t0009	2047	3	3	0	0	0	0	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	t0010	2042	2	0	1	0	0	1	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	t0011	2047	2	0	0	0	1	1	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	t0012	2047	2	2	0	0	0	0	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	t0013	2047	1	1	0	0	0	0	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	t0014	2042	1	0	0	0	0	1	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	t0015	2047	1	0	0	1	0	0	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	t0016	2047	1	0	1	0	0	0	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	t0017	2042	1	0	0	0	0	1	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE1_chr14_72964451_73032106	0/0	t0018	2047	1	0	1	0	0	0	copy fasta	ZFYVE1	chr14	72964451	73032106
ZFYVE21_chr14_103710810_103738664	1/0	t0001	679	268	51	43	132	10	31	copy fasta	ZFYVE21	chr14	103710810	103738664
ZFYVE21_chr14_103710810_103738664	0/0	t0002	679	112	6	25	63	6	12	copy fasta	ZFYVE21	chr14	103710810	103738664