JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFYVE21_chr14_103710810_103738664	0/0	t0003	679	31	26	2	2	1	0	copy fasta	ZFYVE21	chr14	103710810	103738664
ZFYVE21_chr14_103710810_103738664	0/1	t0004	678	26	10	7	6	0	2	copy fasta	ZFYVE21	chr14	103710810	103738664
ZFYVE21_chr14_103710810_103738664	0/0	t0005	683	12	2	8	0	1	1	copy fasta	ZFYVE21	chr14	103710810	103738664
ZFYVE21_chr14_103710810_103738664	0/0	t0006	679	5	0	0	5	0	0	copy fasta	ZFYVE21	chr14	103710810	103738664
ZFYVE21_chr14_103710810_103738664	0/0	t0007	679	2	2	0	0	0	0	copy fasta	ZFYVE21	chr14	103710810	103738664
ZFYVE21_chr14_103710810_103738664	0/0	t0008	683	1	0	1	0	0	0	copy fasta	ZFYVE21	chr14	103710810	103738664
ZFYVE21_chr14_103710810_103738664	0/0	t0009	679	1	1	0	0	0	0	copy fasta	ZFYVE21	chr14	103710810	103738664
ZFYVE26_chr14_67741522_67821590	0/0	t0001	2055	76	8	18	34	4	12	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	t0002	2055	68	27	7	33	0	1	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/1	t0003	2055	56	9	20	17	5	4	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	t0004	2055	32	7	13	0	3	9	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	1/0	t0005	2055	21	17	3	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	t0006	2054	7	7	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	t0007	2055	7	7	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	t0008	2055	5	4	1	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	t0009	2055	3	3	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	t0010	2055	3	3	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	t0011	2055	1	0	1	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	t0012	2055	1	1	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	t0013	2055	1	1	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	t0014	2055	1	0	1	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	t0015	2055	1	0	0	1	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	t0016	2055	1	0	0	0	0	1	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	t0017	2055	1	0	0	0	0	1	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	t0018	2055	1	0	1	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	t0019	2055	1	1	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	t0020	2055	1	0	0	1	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	t0021	2055	1	1	0	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE26_chr14_67741522_67821590	0/0	t0022	2055	1	0	1	0	0	0	copy fasta	ZFYVE26	chr14	67741522	67821590
ZFYVE27_chr10_97732128_97765895	0/1	t0001	1790	199	30	38	90	10	30	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	1/0	t0002	1790	126	7	21	84	4	9	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	t0003	1790	35	32	2	0	0	1	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	t0004	1790	15	15	0	0	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	t0005	1790	4	4	0	0	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	t0006	1790	3	3	0	0	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	t0007	1790	2	0	0	2	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	t0008	1790	2	1	1	0	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	t0009	1790	1	1	0	0	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	t0010	1790	1	1	0	0	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	t0011	1790	1	1	0	0	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	t0012	1790	1	0	0	1	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	t0013	1790	1	0	0	1	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	t0014	1790	1	0	1	0	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	t0015	1790	1	0	1	0	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	t0016	1790	1	0	0	1	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	t0017	1790	1	0	0	1	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	t0018	1790	1	1	0	0	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	t0019	1790	1	0	0	0	0	1	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	t0020	1790	1	1	0	0	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE27_chr10_97732128_97765895	0/0	t0021	1790	1	0	0	0	0	1	copy fasta	ZFYVE27	chr10	97732128	97765895