JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZFYVE27_chr10_97732128_97765895	0/0	t0022	1790	1	1	0	0	0	0	copy fasta	ZFYVE27	chr10	97732128	97765895
ZFYVE28_chr4_2264597_2423645	1/0	t0001	1451	100	9	17	54	2	17	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/1	t0002	1452	83	31	21	12	7	11	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	t0003	1452	67	19	10	28	0	10	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	t0004	1452	18	17	1	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	t0005	1452	4	0	2	0	1	1	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	t0006	1452	3	3	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	t0007	1452	2	0	0	2	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	t0008	1452	2	2	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	t0009	1452	1	0	0	1	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	t0010	1452	1	0	1	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	t0011	1452	1	0	0	0	0	1	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	t0012	1451	1	0	1	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	t0013	1452	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	t0014	1452	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	t0015	1452	1	0	0	1	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	t0016	1452	1	0	1	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	t0017	1452	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	t0018	1452	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE28_chr4_2264597_2423645	0/0	t0019	1451	1	1	0	0	0	0	copy fasta	ZFYVE28	chr4	2264597	2423645
ZFYVE9_chr1_52137089_52351634	1/1	t0001	871	205	89	25	65	4	20	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	t0002	871	1	1	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	t0003	871	1	1	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	t0004	871	1	0	0	1	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	t0005	871	1	0	1	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFYVE9_chr1_52137089_52351634	0/0	t0006	871	1	1	0	0	0	0	copy fasta	ZFYVE9	chr1	52137089	52351634
ZFY_chrY_2930381_2987506	0/1	t0001	2931	104	15	11	68	3	6	copy fasta	ZFY	chrY	2930381	2987506
ZFY_chrY_2930381_2987506	1/0	t0002	2931	22	0	9	1	1	10	copy fasta	ZFY	chrY	2930381	2987506
ZFY_chrY_2930381_2987506	0/0	t0003	2931	2	0	0	2	0	0	copy fasta	ZFY	chrY	2930381	2987506
ZFY_chrY_2930381_2987506	0/0	t0004	2929	1	1	0	0	0	0	copy fasta	ZFY	chrY	2930381	2987506
ZFY_chrY_2930381_2987506	0/0	t0005	2931	1	1	0	0	0	0	copy fasta	ZFY	chrY	2930381	2987506
ZFY_chrY_2930381_2987506	0/0	t0006	2931	1	1	0	0	0	0	copy fasta	ZFY	chrY	2930381	2987506
ZG16B_chr16_2825303_2837276	0/0	t0001	171	266	41	58	122	12	33	copy fasta	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	t0002	171	93	10	19	51	4	9	copy fasta	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	t0003	171	69	41	4	24	0	0	copy fasta	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	t0004	171	4	3	1	0	0	0	copy fasta	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	t0005	171	1	1	0	0	0	0	copy fasta	ZG16B	chr16	2825303	2837276
ZG16B_chr16_2825303_2837276	0/0	t0006	153	1	0	0	1	0	0	copy fasta	ZG16B	chr16	2825303	2837276
ZG16_chr16_29773256_29787973	0/1	t0001	2612	207	35	44	89	12	26	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	t0002	2612	35	2	3	27	0	3	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	t0003	2613	13	0	0	13	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	t0004	2612	12	11	1	0	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	t0005	2613	9	9	0	0	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	t0006	2613	6	5	1	0	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	t0007	2612	5	5	0	0	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	1/0	t0008	2613	4	2	0	1	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	t0009	2612	3	3	0	0	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	t0010	2612	3	1	2	0	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	t0011	2612	3	3	0	0	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	t0012	2613	2	2	0	0	0	0	copy fasta	ZG16	chr16	29773256	29787973