JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZG16_chr16_29773256_29787973	0/0	t0013	2612	2	0	0	2	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	t0014	2612	2	0	2	0	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	t0015	2612	2	2	0	0	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	t0016	2613	1	1	0	0	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	t0017	2613	1	1	0	0	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	t0018	2613	1	1	0	0	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	t0019	2613	1	0	1	0	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	t0020	2612	1	0	0	1	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	t0021	2612	1	0	0	1	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	t0022	2612	1	0	0	0	0	1	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	t0023	2612	1	1	0	0	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	t0024	2612	1	1	0	0	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	t0025	2612	1	1	0	0	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	t0026	2612	1	0	0	1	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZG16_chr16_29773256_29787973	0/0	t0027	2612	1	0	0	1	0	0	copy fasta	ZG16	chr16	29773256	29787973
ZGLP1_chr19_10299803_10314815	1/1	t0001	619	402	82	71	190	13	44	copy fasta	ZGLP1	chr19	10299803	10314815
ZGLP1_chr19_10299803_10314815	0/0	t0002	619	19	1	13	0	3	2	copy fasta	ZGLP1	chr19	10299803	10314815
ZGLP1_chr19_10299803_10314815	0/0	t0003	619	6	6	0	0	0	0	copy fasta	ZGLP1	chr19	10299803	10314815
ZGLP1_chr19_10299803_10314815	0/0	t0004	619	3	3	0	0	0	0	copy fasta	ZGLP1	chr19	10299803	10314815
ZGLP1_chr19_10299803_10314815	0/0	t0005	619	2	0	0	2	0	0	copy fasta	ZGLP1	chr19	10299803	10314815
ZGLP1_chr19_10299803_10314815	0/0	t0006	619	1	1	0	0	0	0	copy fasta	ZGLP1	chr19	10299803	10314815
ZGLP1_chr19_10299803_10314815	0/0	t0007	619	1	1	0	0	0	0	copy fasta	ZGLP1	chr19	10299803	10314815
ZGLP1_chr19_10299803_10314815	0/0	t0008	619	1	1	0	0	0	0	copy fasta	ZGLP1	chr19	10299803	10314815
ZGLP1_chr19_10299803_10314815	0/0	t0009	619	1	1	0	0	0	0	copy fasta	ZGLP1	chr19	10299803	10314815
ZGPAT_chr20_63703039_63741142	0/0	t0001	332	319	78	64	130	13	34	copy fasta	ZGPAT	chr20	63703039	63741142
ZGPAT_chr20_63703039_63741142	1/1	t0002	332	12	0	5	2	1	2	copy fasta	ZGPAT	chr20	63703039	63741142
ZGPAT_chr20_63703039_63741142	0/0	t0003	332	6	0	0	6	0	0	copy fasta	ZGPAT	chr20	63703039	63741142
ZGPAT_chr20_63703039_63741142	0/0	t0004	332	6	6	0	0	0	0	copy fasta	ZGPAT	chr20	63703039	63741142
ZGPAT_chr20_63703039_63741142	0/0	t0005	332	1	0	0	1	0	0	copy fasta	ZGPAT	chr20	63703039	63741142
ZGPAT_chr20_63703039_63741142	0/0	t0006	332	1	0	0	1	0	0	copy fasta	ZGPAT	chr20	63703039	63741142
ZGPAT_chr20_63703039_63741142	0/0	t0007	332	1	0	1	0	0	0	copy fasta	ZGPAT	chr20	63703039	63741142
ZGRF1_chr4_112534339_112641909	1/1	t0001	334	247	56	38	114	11	26	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	t0002	334	138	23	24	72	7	12	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	t0003	334	3	3	0	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	t0004	334	1	1	0	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZGRF1_chr4_112534339_112641909	0/0	t0005	334	1	1	0	0	0	0	copy fasta	ZGRF1	chr4	112534339	112641909
ZHX1_chr8_123243456_123279286	1/0	t0001	2278	144	28	31	64	2	18	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/1	t0002	2279	63	13	13	21	2	13	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	t0003	2282	10	10	0	0	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	t0004	2284	8	8	0	0	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	t0005	2277	8	5	2	0	0	1	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	t0006	2280	7	1	2	3	0	1	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	t0007	2278	6	2	4	0	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	t0008	2278	5	5	0	0	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	t0009	2281	3	3	0	0	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	t0010	2278	2	2	0	0	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	t0011	2279	2	1	1	0	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	t0012	2283	1	1	0	0	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	t0013	2279	1	0	1	0	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	t0014	2282	1	1	0	0	0	0	copy fasta	ZHX1	chr8	123243456	123279286