JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZHX1_chr8_123243456_123279286	0/0	t0015	2278	1	0	0	0	0	1	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	t0016	2278	1	1	0	0	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	t0017	2278	1	0	0	1	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	t0018	2278	1	0	0	1	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	t0019	2278	1	1	0	0	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	t0020	2278	1	0	0	1	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	t0021	2278	1	0	0	1	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	t0022	2283	1	1	0	0	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX1_chr8_123243456_123279286	0/0	t0023	2278	1	1	0	0	0	0	copy fasta	ZHX1	chr8	123243456	123279286
ZHX2_chr8_122776655_122979510	0/0	t0001	1848	80	28	17	21	6	8	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0002	1848	53	7	6	32	1	7	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0003	1848	40	4	7	20	3	6	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0004	1848	12	9	3	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0005	1848	11	5	1	4	0	1	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0006	1848	10	0	3	0	3	4	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0007	1848	9	1	1	6	0	1	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0008	1847	7	0	0	6	0	1	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0009	1848	5	5	0	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0010	1848	5	5	0	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0011	1847	4	0	1	3	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0012	1847	4	0	1	3	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0013	1848	4	4	0	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0014	1848	3	2	1	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0015	1848	3	0	0	3	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0016	1848	2	2	0	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0017	1848	2	2	0	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0018	1848	2	2	0	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0019	1848	2	1	0	1	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0020	1848	2	0	1	0	0	1	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0021	1848	2	0	2	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0022	1848	2	1	1	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0023	1847	1	0	0	0	0	1	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0024	1848	1	0	1	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0025	1848	1	1	0	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0026	1848	1	1	0	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0027	1848	1	1	0	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0028	1848	1	1	0	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0029	1848	1	1	0	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0030	1848	1	1	0	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0031	1848	1	0	1	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0032	1848	1	1	0	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0033	1848	1	0	0	0	1	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0034	1848	1	1	0	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0035	1848	1	1	0	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0036	1848	1	0	0	1	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0037	1848	1	1	0	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0038	1848	1	0	1	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0039	1835	1	1	0	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0040	1848	1	1	0	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX2_chr8_122776655_122979510	0/0	t0041	1848	1	1	0	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510