JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZHX2_chr8_122776655_122979510	0/0	t0042	1848	1	1	0	0	0	0	copy fasta	ZHX2	chr8	122776655	122979510
ZHX3_chr20_41173455_41322731	0/0	t0001	7204	82	14	13	39	4	12	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	1/0	t0002	7204	73	10	19	31	2	10	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0003	7204	46	0	7	39	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0004	7208	19	6	8	0	3	2	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0005	7201	15	5	1	5	2	2	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0006	7204	15	0	2	13	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0007	7202	14	11	3	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0008	7204	10	8	1	1	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0009	7201	7	0	0	7	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0010	7204	5	0	0	5	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0011	7205	4	0	0	4	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0012	7204	3	3	0	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0013	7204	3	0	0	3	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0014	7206	3	0	0	0	1	2	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0015	7204	3	3	0	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0016	7209	3	3	0	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0017	7205	2	0	0	2	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0018	7205	2	0	0	2	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0019	7205	2	1	0	1	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0020	7204	2	0	0	2	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0021	7200	2	1	1	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0022	7204	2	0	0	2	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0023	7204	2	2	0	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0024	7204	2	2	0	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0025	7204	2	1	1	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0026	7204	1	1	0	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0027	7205	1	0	0	1	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0028	7204	1	1	0	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0029	7204	1	1	0	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0030	7204	1	0	0	1	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0031	7206	1	0	0	1	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0032	7204	1	0	0	1	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0033	7204	1	0	0	1	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0034	7204	1	0	0	1	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0035	7205	1	0	0	0	0	1	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0036	7204	1	0	1	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0037	7204	1	1	0	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0038	7204	1	1	0	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/1	t0039	7201	1	0	0	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0040	7201	1	0	0	1	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0041	7200	1	0	1	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0042	7205	1	0	0	1	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0043	7205	1	0	0	1	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0044	7205	1	0	0	1	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0045	7204	1	0	0	1	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0046	7204	1	1	0	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0047	7204	1	1	0	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0048	7204	1	1	0	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0049	7206	1	1	0	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731