JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZHX3_chr20_41173455_41322731	0/0	t0050	7205	1	1	0	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0051	7201	1	0	0	0	0	1	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0052	7201	1	0	0	1	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0053	7205	1	0	0	1	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0054	7204	1	1	0	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0055	7208	1	1	0	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0056	7208	1	0	1	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0057	7201	1	0	0	0	0	1	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0058	7204	1	0	0	0	0	1	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0059	7204	1	0	0	1	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0060	7204	1	0	1	0	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0061	7204	1	0	0	1	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZHX3_chr20_41173455_41322731	0/0	t0062	7204	1	0	0	1	0	0	copy fasta	ZHX3	chr20	41173455	41322731
ZIC1_chr3_147404365_147421719	1/0	t0001	3917	73	15	20	31	4	2	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0002	3918	58	20	11	18	0	9	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0003	3917	31	8	2	18	2	1	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0004	3919	24	6	5	6	1	6	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0005	3917	22	1	3	15	0	3	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0006	3918	18	4	4	7	2	1	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0007	3918	13	0	4	8	0	1	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0008	3918	12	1	1	8	2	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0009	3919	8	0	2	6	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0010	3920	7	0	0	7	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0011	3919	6	1	1	2	0	2	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0012	3918	4	0	1	0	2	1	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0013	3917	4	0	0	4	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0014	3919	4	2	1	1	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0015	3919	3	0	3	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0016	3917	3	3	0	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0017	3918	3	3	0	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0018	3918	3	3	0	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0019	3919	3	2	0	0	0	1	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0020	3921	3	0	0	2	0	1	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0021	3917	2	0	0	2	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0022	3916	2	0	0	2	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0023	3916	2	1	0	1	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0024	3917	2	0	2	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0025	3918	2	0	0	2	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0026	3917	2	2	0	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0027	3917	2	0	2	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0028	3918	2	0	0	2	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0029	3918	2	2	0	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0030	3918	2	1	1	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0031	3918	1	0	0	1	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0032	3917	1	0	0	1	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0033	3918	1	0	0	1	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0034	3916	1	0	0	1	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0035	3917	1	0	0	1	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0036	3916	1	0	0	1	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0037	3917	1	0	0	1	0	0	copy fasta	ZIC1	chr3	147404365	147421719