JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZIC1_chr3_147404365_147421719	0/0	t0038	3920	1	0	0	0	0	1	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0039	3918	1	0	0	1	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0040	3917	1	0	0	1	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0041	3917	1	0	0	1	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0042	3917	1	0	0	0	0	1	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0043	3917	1	0	0	1	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0044	3917	1	0	1	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/1	t0045	3917	1	0	0	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0046	3917	1	0	0	0	0	1	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0047	3917	1	0	0	1	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0048	3917	1	0	0	1	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0049	3918	1	1	0	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0050	3917	1	0	0	1	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0051	3919	1	0	0	0	0	1	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0052	3918	1	0	0	1	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0053	3918	1	0	0	1	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0054	3918	1	0	0	1	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0055	3918	1	1	0	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0056	3918	1	1	0	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0057	3919	1	0	0	1	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0058	3919	1	1	0	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0059	3919	1	1	0	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0060	3919	1	0	1	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0061	3918	1	0	0	1	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0062	3918	1	0	0	0	0	1	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0063	3918	1	0	0	0	0	1	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0064	3920	1	0	1	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0065	3917	1	0	0	1	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0066	3918	1	0	0	0	1	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0067	3918	1	0	1	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC1_chr3_147404365_147421719	0/0	t0068	3920	1	0	1	0	0	0	copy fasta	ZIC1	chr3	147404365	147421719
ZIC2_chr13_99976784_99991765	1/0	t0001	1365	234	26	40	131	11	25	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/1	t0002	1366	92	33	13	37	0	8	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	t0003	1367	29	6	3	14	1	5	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	t0004	1366	28	11	5	5	2	5	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	t0005	1365	18	3	2	10	2	1	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	t0006	1368	13	2	9	0	2	0	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	t0007	1367	7	5	2	0	0	0	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	t0008	1364	6	0	2	3	0	1	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	t0009	1365	3	3	0	0	0	0	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	t0010	1366	2	2	0	0	0	0	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	t0011	1365	2	0	2	0	0	0	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	t0012	1368	2	0	0	1	0	1	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	t0013	1368	2	2	0	0	0	0	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	t0014	1365	1	0	1	0	0	0	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	t0015	1365	1	0	1	0	0	0	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	t0016	1365	1	1	0	0	0	0	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	t0017	1381	1	0	0	1	0	0	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	t0018	1368	1	1	0	0	0	0	copy fasta	ZIC2	chr13	99976784	99991765
ZIC2_chr13_99976784_99991765	0/0	t0019	1367	1	1	0	0	0	0	copy fasta	ZIC2	chr13	99976784	99991765