JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZIC3_chrX_137561127_137577102	1/1	t0001	2598	298	67	60	125	11	33	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	t0002	2598	2	2	0	0	0	0	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	t0003	2599	1	0	0	1	0	0	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	t0004	2594	1	0	0	1	0	0	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	t0005	2597	1	0	0	1	0	0	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	t0006	2595	1	0	0	1	0	0	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	t0007	2597	1	0	0	0	0	1	copy fasta	ZIC3	chrX	137561127	137577102
ZIC3_chrX_137561127_137577102	0/0	t0008	2597	1	1	0	0	0	0	copy fasta	ZIC3	chrX	137561127	137577102
ZIC4_chr3_147381046_147411543	0/1	t0001	3010	140	47	23	52	3	14	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	1/0	t0002	3010	84	3	28	35	8	9	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	t0003	3010	76	21	7	35	4	9	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	t0004	3010	26	0	4	22	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	t0005	3011	8	0	3	5	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	t0006	3010	8	0	4	0	2	2	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	t0007	3010	4	1	1	0	1	1	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	t0008	3010	3	0	0	3	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	t0009	3010	2	1	1	0	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	t0010	3010	1	0	0	1	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	t0011	3010	1	0	0	1	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	t0012	3010	1	1	0	0	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	t0013	3010	1	0	0	1	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	t0014	3010	1	1	0	0	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	t0015	3010	1	0	0	1	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	t0016	3010	1	0	0	1	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	t0017	3011	1	0	0	1	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	t0018	3010	1	0	0	0	0	1	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	t0019	3010	1	0	0	1	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	t0020	3010	1	1	0	0	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	t0021	3010	1	0	1	0	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	t0022	3010	1	1	0	0	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	t0023	3010	1	0	0	1	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	t0024	3010	1	1	0	0	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	t0025	3010	1	1	0	0	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC4_chr3_147381046_147411543	0/0	t0026	3010	1	1	0	0	0	0	copy fasta	ZIC4	chr3	147381046	147411543
ZIC5_chr13_99957964_99976767	0/1	t0001	2579	141	1	21	96	5	17	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0002	2578	47	12	10	11	4	10	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0003	2574	23	4	13	0	3	3	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0004	2577	23	14	4	0	2	3	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	1/0	t0005	2578	23	0	6	14	1	1	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0006	2576	19	3	0	15	0	1	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0007	2576	18	5	3	9	0	1	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0008	2579	11	11	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0009	2578	11	3	3	5	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0010	2577	8	3	4	1	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0011	2575	7	6	1	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0012	2581	6	0	0	4	1	1	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0013	2580	6	0	1	5	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0014	2575	5	2	2	0	0	1	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0015	2583	5	0	0	5	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0016	2576	4	4	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767