JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZIC5_chr13_99957964_99976767	0/0	t0017	2579	4	0	0	4	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0018	2577	3	2	0	0	0	1	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0019	2576	3	3	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0020	2577	3	2	1	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0021	2575	2	2	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0022	2577	2	1	0	1	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0023	2582	2	2	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0024	2582	2	0	0	2	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0025	2579	2	0	0	2	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0026	2577	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0027	2579	1	0	1	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0028	2576	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0029	2577	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0030	2575	1	0	0	0	0	1	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0031	2574	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0032	2575	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0033	2576	1	0	0	1	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0034	2577	1	0	0	0	0	1	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0035	2577	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0036	2579	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0037	2580	1	0	0	1	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0038	2581	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0039	2581	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0040	2581	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0041	2577	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0042	2579	1	0	0	1	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0043	2576	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0044	2577	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0045	2578	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0046	2579	1	0	1	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0047	2579	1	0	0	1	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0048	2578	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0049	2579	1	0	0	1	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0050	2580	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0051	2582	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0052	2579	1	0	1	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0053	2576	1	0	0	0	0	1	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0054	2578	1	1	0	0	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIC5_chr13_99957964_99976767	0/0	t0055	2579	1	0	0	1	0	0	copy fasta	ZIC5	chr13	99957964	99976767
ZIK1_chr19_57579145_57598890	1/1	t0001	2828	261	33	53	138	5	30	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0002	2828	74	19	18	25	5	7	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0003	2981	32	7	2	19	1	3	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0004	2829	11	8	0	3	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0005	2828	8	0	0	5	0	3	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0006	2828	5	0	0	5	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0007	2829	4	4	0	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0008	2828	4	4	0	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0009	2827	3	1	0	2	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0010	2829	3	3	0	0	0	0	copy fasta	ZIK1	chr19	57579145	57598890
ZIK1_chr19_57579145_57598890	0/0	t0011	2980	3	0	0	3	0	0	copy fasta	ZIK1	chr19	57579145	57598890